Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00085
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26244| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.020
SB_37080| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_2569| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_9194| Best HMM Match : SWIM (HMM E-Value=0.01)                      28   9.1  

>SB_26244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 291 MSDEERDQIDTGAQRIMNTCSHLLKEFRNDNRRTTVTP 404
           M+D ERDQID  AQ  M TC + +K  +N+   +   P
Sbjct: 1   MTDTERDQIDNDAQMYMRTCHNSIKLLKNEESNSENKP 38


>SB_37080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 285 DDMSDEERDQIDTGAQRIMNTCSHLLKEF--RNDNRRTTVTPQT 410
           D+ S+ E ++   G   I +TC HLLK F  R+     T+ P T
Sbjct: 87  DEDSESEEEEESGGGVSIRDTCYHLLKLFCKRSHRLERTLAPAT 130


>SB_2569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 715 LKHCNSSEVNSPSSDIIAISFSDKSKLFCIV 623
           L+  NSS V +P SD+   SFS ++ + C+V
Sbjct: 34  LRFLNSSTVPNPISDLFTDSFSRRTIIKCVV 64


>SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1091

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 471 VHSELKAMRVKRA*I*GNCLDWSYQRPNRVFLI 569
           VH E+K  R++ A + G CLD  Y+R  RV  I
Sbjct: 364 VHLEIK--RIQAARVAGRCLDEPYERTARVHTI 394


>SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1035

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 703 NSSEVNSPSSDIIAISFSDKSKLFCIV 623
           N S V +P SD++ +  SDK +LF +V
Sbjct: 712 NRSPVVTPVSDVVEVPGSDKQRLFHLV 738


>SB_9194| Best HMM Match : SWIM (HMM E-Value=0.01)
          Length = 701

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 161 G*NQKMLSWQQLRIFVHKLPSLETSYW 241
           G  ++  SWQ +R  V KLPSL  + W
Sbjct: 554 GETRRQCSWQTIRPAVEKLPSLLKNKW 580


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,950,965
Number of Sequences: 59808
Number of extensions: 342081
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)