Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00073
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.44 
SB_53704| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-18)                 27   7.1  
SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)                       27   7.1  
SB_29732| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     27   9.4  
SB_33311| Best HMM Match : RIO1 (HMM E-Value=0)                        27   9.4  

>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +1

Query: 301 EFHTLVKK--ELVNRVKRHQYDENSAENKIARLTAYIRCIQNI-MEKNPRNSKMKRTVQE 471
           E  +L KK  EL N  K  +     AE +I  L        ++ MEK+   S++KRT+++
Sbjct: 678 ELKSLKKKHEELENSSKGAERRSKEAEKRIENLEQECASANDMAMEKSVELSRLKRTIEK 737

Query: 472 MIDRRKKLLKYLR 510
            ID+  K    LR
Sbjct: 738 KIDKLTKENSELR 750


>SB_53704| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-18)
          Length = 722

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = -1

Query: 521 IIVLRKYFNSFFLLSIISCTVRFIFEFLGF---FSM-MFCIQRMYAV 393
           I++  K+F+  ++  ++  + RF+  F  F   FS+ +  ++RMYAV
Sbjct: 87  IMLFTKFFSGEYISELLFVSHRFVDSFTSFVALFSLVLVAVERMYAV 133


>SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)
          Length = 493

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 68  RRFACSAIQSRGLKHQVNIKWVRP 139
           R F C+  Q R    Q N+ W++P
Sbjct: 380 RPFPCAPSQRRSYNSQANVAWIKP 403


>SB_29732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 384 CKINCIHSLYTKHHGKKP*ELKNEANCTRDD 476
           CKI  IH L  +   +   E+ NEA C+R D
Sbjct: 487 CKIGLIHILSNQKFVEFAEEVANEAKCSRTD 517


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 286 HLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIME 429
           HL +KE    V K  + ++K+HQ+D    E    R    +   Q I E
Sbjct: 658 HLNEKEKEIEVLKVEIMKLKKHQFDNLVEEVSSVRAELAMEAAQKIDE 705


>SB_33311| Best HMM Match : RIO1 (HMM E-Value=0)
          Length = 490

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = +1

Query: 235 RRNQGCSESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKI 384
           RRN    E     F+   +G K     +   + N +K+H Y E    +++
Sbjct: 149 RRNAQNLEKFPPGFAAGDVGSKSLDLKLSNSVYNTLKQHSYQEERRSHRV 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,363,212
Number of Sequences: 59808
Number of extensions: 298875
Number of successful extensions: 680
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)