Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00051
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_19676| Best HMM Match : Ctr (HMM E-Value=3.1)                       29   5.1  
SB_16417| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = +2

Query: 98   VCENQ----EDNNGKCVNTIKPCEHNQDVC 175
            VCEN     E+N   C N +  CE+N++VC
Sbjct: 3409 VCENNVNVCENNENVCENNLNVCENNENVC 3438



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = +2

Query: 98   VCENQE---DNN-GKCVNTIKPCEHNQDVC 175
            VCEN E   +NN   C N +  CE+N++VC
Sbjct: 3465 VCENNENVCENNLNVCENNLNVCENNENVC 3494



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 98   VCENQEDNNGKCVNTIKPCEHNQDVC 175
            VCEN   N   C N +  CE+N++VC
Sbjct: 3402 VCEN---NVNVCENNVNVCENNENVC 3424



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = +2

Query: 95   YVCENQ----EDNNGKCVNTIKPCEHNQDVC 175
            +VCEN     ++N   C N +  CE+N +VC
Sbjct: 3380 HVCENNVNVCKNNMDMCKNNVNVCENNVNVC 3410



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = +2

Query: 98   VCENQ----EDNNGKCVNTIKPCEHNQDVC 175
            VCEN     E+N   C N    CE+N++VC
Sbjct: 3472 VCENNLNVCENNLNVCENNENVCENNENVC 3501


>SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = +2

Query: 98  VCENQED----NNGKCVNTIKPCEHNQDVC 175
           VCEN E+    N   C N +  CE++++VC
Sbjct: 63  VCENNENVCENNENVCENNVNVCENSENVC 92



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +2

Query: 98  VCENQEDNNGK---CVNTIKPCEHNQDVC 175
           VCEN E+ N     C N +  C++N +VC
Sbjct: 36  VCENNENVNNNVNVCKNNVNMCKNNVNVC 64



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 98  VCENQEDNNGKCVNTIKPCEHNQDVC 175
           VC+N E+    C N +  CE+N++VC
Sbjct: 15  VCKNNEN---VCENNVNVCENNENVC 37


>SB_19676| Best HMM Match : Ctr (HMM E-Value=3.1)
          Length = 311

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +2

Query: 26  TKSATIFVFIIITSFLEVLSLECYVCENQEDNNGKCVNTIKPCEHNQDV 172
           T    +   I I + LE+++ +   C++ +D +   + T+ P EH + +
Sbjct: 138 TTKLVVCYLIAILAILEIMAGQIMYCQSSDDPSATYLTTVVPNEHPEAI 186


>SB_16417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +1

Query: 265 ECPKTRQQN---MPLCTYIWYQDWKCS-DCCLGDRCNYYIISGSRQNMPFNRIILGLTSV 432
           +C K    N   +P CT +   +  CS  CC GD CN    +GSR  +  + +I+G  ++
Sbjct: 14  DCVKEEHCNEAALPQCTQLTGDNQFCSFSCCKGDHCN----AGSR--IAISGLIIGAWAL 67

Query: 433 YLLSLTNF 456
            L +   F
Sbjct: 68  VLTAAQFF 75


>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
 Frame = +2

Query: 92  CYVCE----NQEDNNGKCVNTIKPCEHNQDVCL 178
           C  CE        NNG CV+    C H   VC+
Sbjct: 295 CQYCEPLYVGDARNNGSCVSCYHTCNHTATVCM 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,025,374
Number of Sequences: 59808
Number of extensions: 401255
Number of successful extensions: 888
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)