Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00048
         (381 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             163   3e-41
SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)               29   1.7  
SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)         28   2.2  
SB_6460| Best HMM Match : SRCR (HMM E-Value=2e-08)                     28   2.9  
SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   6.8  
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  163 bits (397), Expect = 3e-41
 Identities = 76/96 (79%), Positives = 83/96 (86%)
 Frame = +2

Query: 2   RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 181
           +KR NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIVEAAAVRDI DASVY ++
Sbjct: 3   KKRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYEVY 62

Query: 182 QLPKLYAKLHYCVSCAIHSKVVRNNRRKTEESVLLP 289
            LPKLY KLHYCVSCAIHSKVVR NR K +  +  P
Sbjct: 63  ALPKLYVKLHYCVSCAIHSKVVR-NRSKEDRKIRTP 97


>SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)
          Length = 1123

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 218 VSCAIHSKVVRNNRRKTEESVLLPR 292
           VSC +  K VR+ +RK EE V L R
Sbjct: 376 VSCKMDEKAVRHGKRKGEEEVKLTR 400


>SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)
          Length = 558

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = -3

Query: 178 HWVYRGIVN------ISDRRRFYDVPNHELFDSLVLWH-APRAVCASHS 53
           H+  RGI N      +S+RR+F  V N E  D +VL H  P+A C+  S
Sbjct: 441 HYGIRGIANEWFSSYLSNRRQFVSVNNSE-SDEVVLTHGVPQAKCSIQS 488


>SB_6460| Best HMM Match : SRCR (HMM E-Value=2e-08)
          Length = 234

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 217 RVMRHPQQSCQEQSKKDRRIRTPPKSNFPRDMSRPQAVQR 336
           ++ R PQ S   Q  +  RI  PP+ + P  +S+P  + R
Sbjct: 182 QISRSPQISESSQISQPPRISQPPQISQPPQISQPPQISR 221


>SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 842

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 83  VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 196
           + K K  +  VI   + A AV D++  +VYP+F  P L
Sbjct: 47  IVKKKRNEGKVIYLFIGALAVTDVSLLAVYPLFAFPVL 84


>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2123

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 217  RVMRHPQQSCQEQSKKDRRIRTPPKSNFPRD 309
            R ++HPQ   Q  +K+  R   PPK  F R+
Sbjct: 1131 RAIKHPQGDSQWDNKEALRRIMPPKPRFRRN 1161


>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/42 (21%), Positives = 23/42 (54%)
 Frame = +1

Query: 208 PLLRVMRHPQQSCQEQSKKDRRIRTPPKSNFPRDMSRPQAVQ 333
           P+   +R P +S ++  +K+R++ T P     + +++   +Q
Sbjct: 753 PVKLTIRRPDRSSEKDKEKERKLNTEPPKVVVKPLTKESKLQ 794


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,902,616
Number of Sequences: 59808
Number of extensions: 203143
Number of successful extensions: 529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)