Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00031
(485 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05) 66 1e-11
SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7) 29 2.0
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2) 28 3.6
SB_35688| Best HMM Match : COX2_TM (HMM E-Value=8.8) 28 4.7
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_48891| Best HMM Match : PQQ (HMM E-Value=0.73) 28 4.7
SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5) 28 4.7
SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 27 6.2
SB_21103| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 27 6.2
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 27 6.2
SB_16014| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
>SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)
Length = 98
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +2
Query: 257 SLKKLSVNTIPGIEEVNMIKEDGTVIHFNNPK 352
+LKKLSVN IPGIEEVNMIKEDGTVIHFNNPK
Sbjct: 48 TLKKLSVNPIPGIEEVNMIKEDGTVIHFNNPK 79
>SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7)
Length = 335
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 115 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 17
NC+ GH T++ +Y +YE SM + R H
Sbjct: 139 NCLWTLFGHTLRTVYRHYSDTRYELSMDVIRTH 171
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 115 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMHVF*T 5
NC+ GH T++ Y +YE SM + R H T
Sbjct: 244 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTHTLRT 280
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 115 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 17
NC+ GH T++ Y +YE SM + R H
Sbjct: 10 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 42
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 115 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 17
NC+ GH T++ Y +YE SM + R H
Sbjct: 45 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 77
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 115 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 17
NC+ GH T++ Y +YE SM + R H
Sbjct: 80 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 112
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 115 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 17
NC+ GH T++ Y +YE SM + R H
Sbjct: 209 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 241
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 115 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 17
NC+ GH T++ Y YE SM + R H
Sbjct: 174 NCLWTLFGHTLRTVYGRYSDTHYELSMDVIRTH 206
>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 328 CDTL*QPEAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 453
C + P L ANT ITG G++ + ++ P I+ LGP
Sbjct: 242 CRVMGLPMRYPDLCANTLFITGKGQHHRQIKLQP-IVRALGP 282
>SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)
Length = 2527
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 275 VNTIPGIEEVNMIKEDGTVIHFNNPKHKRRWPRTRS 382
V T P ++ + EDG ++ P+HKRR P R+
Sbjct: 496 VGTQPKDVKLEELNEDGEILPTPPPRHKRRKPLPRN 531
>SB_35688| Best HMM Match : COX2_TM (HMM E-Value=8.8)
Length = 159
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 214 LFTLLRPQMTKNCSIAQKVVSEHNSWHRRGK 306
LF L +TKN S A++++ E W RR +
Sbjct: 32 LFYLDNDMITKNISKAKELIEEGGDWDRRNR 62
>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1718
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/64 (29%), Positives = 36/64 (56%)
Frame = +2
Query: 242 QKTAASLKKLSVNTIPGIEEVNMIKEDGTVIHFNNPKHKRRWPRTRSRLPDTGRISRPQR 421
++ ASL +L +N+ PGIE V + +V+ F +H + + +S L + R++ +R
Sbjct: 730 KEETASLLELDLNSAPGIEGVPGSRLLESVLEFTTSEHSDK--KDKSSL--SPRVNNSER 785
Query: 422 CSRV 433
S+V
Sbjct: 786 NSKV 789
>SB_48891| Best HMM Match : PQQ (HMM E-Value=0.73)
Length = 277
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +2
Query: 296 EEVNMIKEDGTVIHFN---NPKHKRRWPRTRSR 385
E+ + +++DG V++ N NP+H RR R R+R
Sbjct: 120 EDEDEVEDDGGVLYANQPANPQHSRRSQRYRAR 152
>SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)
Length = 554
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 115 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 17
NC+ GH T++ Y +YE SM + R H
Sbjct: 58 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 90
>SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -3
Query: 249 VFCHLWPQ*-REQPSSCVSVCPY 184
VF +WP+ RE P+SC+S P+
Sbjct: 734 VFAFIWPRFYREAPASCISELPW 756
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 248 TAASLKKLSVNTI-PGIEEVNMIKEDGTVIHFNNPKHKRRWPRTRSRLPDTGRISRPQRC 424
+A ++ + +++TI GI+ V +D + NN KHK R+ RL G + +C
Sbjct: 1223 SAPAVFQSTIDTILKGIDGVVCYIDDILITGRNNQKHKARFEAVLERLEKYGISLKLSKC 1282
Query: 425 S 427
S
Sbjct: 1283 S 1283
>SB_21103| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 366
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 248 TAASLKKLSVNTI-PGIEEVNMIKEDGTVIHFNNPKHKRRWPRTRSRLPDTGRISRPQRC 424
+A ++ + +++TI GI+ V +D + NN KHK R+ RL G + +C
Sbjct: 164 SAPAVFQSTIDTILKGIDGVVCYIDDILITGRNNQKHKARFEAVLERLEKYGISLKLSKC 223
Query: 425 S 427
S
Sbjct: 224 S 224
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 204 CVSVCP-YLRCVLATGVSLIFRCSFCC 127
C S+C Y RCV+ V++ CS C
Sbjct: 639 CTSICHRYGRCVMLANVTMFCNCSRAC 665
>SB_16014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 81 IKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPR 200
I P+L T+F+ +N+++ EK Q+ V G + P+
Sbjct: 73 IDNLPILLFTRFSCRNTQVREEKNLTSQNCVESGNEKIPK 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,562,639
Number of Sequences: 59808
Number of extensions: 316389
Number of successful extensions: 852
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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