Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0285.Seq
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.25 
SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)              30   2.4  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      28   7.2  
SB_34156| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_53977| Best HMM Match : AbfB (HMM E-Value=6e-08)                    28   9.5  
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 926

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 591 GLWSPQTHPKNFPTPSSVANHFSDGHPGQLKPKNFTFLGAKGQLRF 728
           G+ +PQ     FPTP   +NH+  G P Q++ K+ +F    G L +
Sbjct: 821 GIINPQQDVYQFPTPLPQSNHYHQGGPHQMR-KSLSFPRDPGVLHY 865


>SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)
          Length = 769

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 95 SQASAADTRPSHTKILRLPILFGLK 21
          ++ASAAD RP HT  L  P++ G K
Sbjct: 8  NEASAADRRPGHTARLHSPLMAGPK 32


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 330 DTLTKFDEECTNSVVEAD 383
           D++TK DEE TNSV + D
Sbjct: 483 DSITKLDEELTNSVTQQD 500


>SB_34156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 64  LGLVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQR-YVVTLVGSR 222
           LGL +A++  + +    +G    G++  RL+  G VERY+P+ R + V+L   R
Sbjct: 172 LGLSAASI--DNSSSVVMGVVGLGNDTARLVYTGGVERYSPESRAFAVSLFDQR 223


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 122 EPTPGPGFSSQASAADTRPSHTKILRLPIL 33
           +PTP P   S     DTRP    I R+P++
Sbjct: 582 QPTPPPQTPSATRRTDTRPRPVSIERVPLM 611


>SB_53977| Best HMM Match : AbfB (HMM E-Value=6e-08)
          Length = 172

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 621 NFPTPSSVANHFSDGHPGQLKPKNFTFLGAKGQLRFQT 734
           NF   S+        HPGQ + K   FLG KG +  ++
Sbjct: 41  NFGIASNTHGSLLSKHPGQFRIKKGGFLGKKGTVSIES 78


>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1680

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 509 QTNLRGHVSGPSPTAAPATTLNIGWCSRALVSANTSKELPDPKLCG*SLL*RASGPTQA 685
           QT    H +GP  T   ATT +    ++A   AN + ++ +  +   S L   +GPTQ+
Sbjct: 644 QTEAPTHTAGPPQTTEQATTNDYWQTTQAYNQANAAYQVQNNAVL--STLTTTAGPTQS 700


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,021,367
Number of Sequences: 59808
Number of extensions: 577098
Number of successful extensions: 1836
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1836
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)