Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0281.Seq
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58950| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)                       31   1.3  
SB_6969| Best HMM Match : Astacin (HMM E-Value=0)                      29   4.1  
SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)                  28   9.4  

>SB_58950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 28/74 (37%), Positives = 39/74 (52%)
 Frame = +2

Query: 281 TRNRFIYWQTTSDAIEIXXXXXXXXXXXXXXRCKVAPGTPPLSNITVYERSSTNNVVILA 460
           T NRFI W+   + +E+              + +   G   L  ++VYE  S  NV++L 
Sbjct: 61  TNNRFILWKINDNILELSEYSLDVNLSGNRIQLRFTDGKL-LPKVSVYE--SAGNVILLI 117

Query: 461 ATVSSVHRLVFPHP 502
           AT +SVHRLVFPHP
Sbjct: 118 ATTTSVHRLVFPHP 131


>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1858

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -3

Query: 164  NIMIWSNLLERDRHSFKKFHGELCNTKAPKSDILVNQLK 48
            NI  W+NL  ++    KK+HGE+ N +   S+ + N+L+
Sbjct: 1707 NIKYWTNLRSKEEALSKKWHGEIFNDQRKNSNEM-NKLR 1744


>SB_6969| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 225

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -3

Query: 158 MIWSNLLERDRHSFKKF-HGELCNTKAP 78
           ++WSN+ E ++H+F+K+ HG + +   P
Sbjct: 142 IVWSNIKEENKHNFEKYNHGVIDSLGVP 169


>SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)
          Length = 724

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 114 LEAMPVTFKEIAPNHNIPEKWKEIVLNTGG 203
           LE++P +FK +  N+  P++W   V+N GG
Sbjct: 260 LESLPYSFKGVDVNNKQPKEW---VINPGG 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,561,602
Number of Sequences: 59808
Number of extensions: 425653
Number of successful extensions: 813
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)