Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0280.Seq
(766 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_19576| Best HMM Match : Somatomedin_B (HMM E-Value=2.7) 29 4.1
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 29 4.1
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036) 29 5.4
SB_56293| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6) 28 7.2
SB_42243| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 28 9.5
SB_33182| Best HMM Match : rve (HMM E-Value=0.00043) 28 9.5
SB_6203| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_39575| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 32.3 bits (70), Expect = 0.44
Identities = 23/94 (24%), Positives = 42/94 (44%)
Frame = +3
Query: 267 DRYSEKLSKLLRLKMNRKHILDRCERLLAPKLKKDSLLTEAKQCRDKIDLLKLAINQRRS 446
DR + + +R++ + D ERL K+ TE QC +K+ L+ +
Sbjct: 2375 DRIATLEKRYVRMQHEVTGLNDDNERLETELATKE---TELIQCEEKVRDLQEKLELSEQ 2431
Query: 447 NVDXKXKELSELKTYNTELALRASKISEKGSKSG 548
N++ ++ L ELA+R + ++E K G
Sbjct: 2432 NLNQLLRKAEALPKIEEELAVRMAALNEAAEKQG 2465
>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1553
Score = 30.3 bits (65), Expect = 1.8
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Frame = +3
Query: 195 SKEELLLHGLYKRRKFCT*FMPYSDRYSEKLSKLLRLKMNRKHILDRCERLLAP-KLKKD 371
S+ E+L +Y R T +R ++ L+ R + + E L+ K K D
Sbjct: 1435 SEHEVLAEEVYTRYSSRT--RASIERIRQQYEDCLQDVQTRNNSVVEMENKLSEMKSKAD 1492
Query: 372 SLLTEAKQCRDKIDLLKLAINQRRSNVDXKXKELSELKTYNTELALRASKISEK 533
+ + C D I + L I+ SN+D K E + + +L+ ++ E+
Sbjct: 1493 EYTDQLEHCEDTIREMNLKIHSLESNIDQKDHENAMKEDAINQLSSEMDELQEQ 1546
>SB_19576| Best HMM Match : Somatomedin_B (HMM E-Value=2.7)
Length = 149
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 94 MASSYFTESEAPRDFRVSSTESDGQYTKCHLCYTVKRNFYC-TDCI 228
M TE D + S +SD Q C C++ K + C DC+
Sbjct: 1 MCCHSITEYSTKLDEDIKSLDSDFQKILCKFCFSTKESLRCPADCL 46
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +3
Query: 279 EKLSKLLRLKMNRKHILDRCERLLAPKLKKDSLLTEAKQCRDKIDLLKLAINQRRSNVDX 458
EK+ + RL+ + I E L PK+K+ S T+ + R+ ++ LK INQ N+
Sbjct: 68 EKMELIARLENQDELIKQLREGLRNPKVKEKSENTKLNKEREILE-LKGVINQHEINIKQ 126
Query: 459 KXKEL 473
+EL
Sbjct: 127 LQQEL 131
>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
Length = 1336
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 67 IKLRVIPNKMASSYFTESEAPR-DFRVSSTESDGQYTKCH-LCYTVKRNFYCTDCIKEGN 240
I+L ++ + A++ + P D RV + G Y + + R++YCT C K N
Sbjct: 395 IELNIVSREHANTVIFSGDLPDPDHRVYLYLARGHYDYIKSMTAVLGRSYYCTACKKGYN 454
Query: 241 FVHSSCL 261
V +C+
Sbjct: 455 NVRHACV 461
>SB_56293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 91 KMASSYFTESEAPRDFRVSSTESDGQYTKCHLCYTVKRNFYCTDCI 228
+M F + +P V GQY K TV+RNFY DC+
Sbjct: 39 QMLLHIFGATSSPSCSNVDLRRCRGQYGKL-AADTVRRNFYVDDCL 83
>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
Length = 349
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -2
Query: 159 TLC*RNSKISRSLAFSEITRSHF--IRDYAQFNSVYMSSLDF 40
TL +++ + ++ + + RSH+ +R A+F+S Y S +DF
Sbjct: 151 TLQTKDTTLQEAITTATLARSHYSRLRSDAEFDSFYQSCVDF 192
>SB_42243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 360 LKKDSLLTEAKQCRDKIDLLKLAIN---QRRSNVDXKXKELSELKTYNTELALRASKISE 530
LKKDS +TE+ + + +L L QRR + E S++KT+ T + +S
Sbjct: 4 LKKDSGITESTRIETFLFVLVLTAPKSLQRRKVIRETWIEQSKIKTFVTRFVIGGKTLSS 63
Query: 531 KGSKS 545
+ KS
Sbjct: 64 EERKS 68
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 375 LLTEAKQCRDKIDLLKLAINQRRSNVDXKXKELSELKTYNTEL 503
LLT D+ID LK AI++ + ++ ELK N +L
Sbjct: 1380 LLTSKDFLEDEIDNLKAAIDKTEKEKEDLKADIDELKAENIKL 1422
>SB_33182| Best HMM Match : rve (HMM E-Value=0.00043)
Length = 801
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 666 KXPSWRKPRPAXCSPTSQPVHCTD 595
K PSWR PA +QP C D
Sbjct: 359 KTPSWRTLAPAHAPSATQPAACCD 382
>SB_6203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 420 SVGQFCLYIVLLLSGGSPFLASGLGAS 340
SVG L I LL +GG+P + GLG S
Sbjct: 49 SVGSSKLAITLLRNGGNPNIQDGLGKS 75
>SB_39575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 666 KXPSWRKPRPAXCSPTSQPVHCTD 595
K PSWR PA +QP C D
Sbjct: 330 KTPSWRTLAPAHAPSATQPAACCD 353
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,933,629
Number of Sequences: 59808
Number of extensions: 354249
Number of successful extensions: 840
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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