Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0273.Seq
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)                   31   0.81 
SB_29469| Best HMM Match : UCH (HMM E-Value=6.7e-06)                   30   2.5  
SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)                       30   2.5  
SB_37808| Best HMM Match : Avirulence (HMM E-Value=2.8)                29   3.3  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      29   4.3  

>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
          Length = 665

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -2

Query: 254 AENNSGHRLSQECFLPEAMVHPGDTVVSGA*GPTQESPPPASTFKRG*FSSCLRPG 87
           A  NS   +SQ   +P+   +PG   ++G   P    PPPAS   RG F+    PG
Sbjct: 152 ARGNSSREMSQLNPVPDYPDYPGGMPMNGYHQPNY-GPPPASPVSRG-FAPATSPG 205


>SB_29469| Best HMM Match : UCH (HMM E-Value=6.7e-06)
          Length = 757

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 446 R*ISIVRAEWKICFC*DYLMIKNLTIWSGVVAIYKYKTL 330
           R ISI+  +WK  FC  +++  +L  W G  ++  +K L
Sbjct: 476 RDISILTFKWKYSFCERFILSDDLWYWVGKSSLQSWKKL 514


>SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)
          Length = 1392

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 730 QTERVLYGKTSNTMPGISFPNGTSIGVVAHKLT 632
           +TE+V +GK ++T PG     G+S G ++  LT
Sbjct: 534 ETEKVEHGKNTSTFPGFDSRAGSSSGKLSKPLT 566


>SB_37808| Best HMM Match : Avirulence (HMM E-Value=2.8)
          Length = 645

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/64 (32%), Positives = 27/64 (42%)
 Frame = -2

Query: 245 NSGHRLSQECFLPEAMVHPGDTVVSGA*GPTQESPPPASTFKRG*FSSCLRPGS*STILN 66
           NSGHR       P A+ +P          P Q SP P S  ++G  S    PGS S    
Sbjct: 531 NSGHRQGNSNVAPLAIPNPNSGHRQSNVAP-QASPSPNSGHRQGNVSQLALPGSISGYRQ 589

Query: 65  TKIA 54
           + +A
Sbjct: 590 SNVA 593


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 10  ITILKDSTEGNKTLSAIFVFRMVDHDPGLKQEENYPLLKVDAGG 141
           +T+L++STEGN+   +  +    D    LK E+   +++VD  G
Sbjct: 170 LTVLQESTEGNEKYHSFLILSREDSSMILKTEQE--IMEVDQSG 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,676,550
Number of Sequences: 59808
Number of extensions: 583091
Number of successful extensions: 1271
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)