Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0258.Seq
(828 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26127| Best HMM Match : Pkinase (HMM E-Value=5.3e-10) 38 0.010
SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24) 31 0.86
SB_52390| Best HMM Match : Cauli_DNA-bind (HMM E-Value=6.4) 31 0.86
SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049) 31 1.1
SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_49929| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_50447| Best HMM Match : ProQ (HMM E-Value=0.44) 30 2.0
SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08) 30 2.6
SB_18367| Best HMM Match : PEP-utilisers_N (HMM E-Value=9.5) 29 3.5
SB_52179| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_58888| Best HMM Match : Protamine_P1 (HMM E-Value=10) 29 4.6
SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 8.0
SB_13495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_26127| Best HMM Match : Pkinase (HMM E-Value=5.3e-10)
Length = 460
Score = 37.9 bits (84), Expect = 0.010
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Frame = +2
Query: 287 DDDDGIR--DESQAPVSHSPPYKRVRALRLFDSPHTPKTLLEKCS---TPTHHPPRTRL 448
DDD + ++ + SPP + LRLFD+PHTP++LL++ S +P H P ++
Sbjct: 69 DDDSPTKMAEDDKENAVFSPP--SIVGLRLFDTPHTPRSLLQRSSISRSPEHVPDNRKI 125
>SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)
Length = 685
Score = 31.5 bits (68), Expect = 0.86
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 207 PTCHKMSRQTIQTNCAYCLVLFSFCTTQSCPFPHIKNNIKDE 82
P H QTI++ +Y + C T P PH K I D+
Sbjct: 413 PPLHHFRSQTIKSERSYLQECWDKCLTNDIPIPHYKVKIYDD 454
>SB_52390| Best HMM Match : Cauli_DNA-bind (HMM E-Value=6.4)
Length = 232
Score = 31.5 bits (68), Expect = 0.86
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 207 PTCHKMSRQTIQTNCAYCLVLFSFCTTQSCPFPHIKNNIKDE 82
P H QTI++ +Y + C T P PH K I D+
Sbjct: 52 PPLHHFRSQTIKSERSYLQECWDKCLTNDIPIPHYKVKIYDD 93
>SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 31.5 bits (68), Expect = 0.86
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 207 PTCHKMSRQTIQTNCAYCLVLFSFCTTQSCPFPHIKNNIKDE 82
P H QTI++ +Y + C T P PH K I D+
Sbjct: 940 PPLHHFRSQTIKSERSYLQECWDKCLTNDIPIPHYKVKIYDD 981
>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
Length = 370
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 236 EPDTSVLVPRKLDFSNLDDDDGIRDESQAPVSH--SPPYKRVRALRLFDSPHTPKT 397
E DT+ + L +N D D+G+ ++SQ P+ H + P R D HTP T
Sbjct: 51 EDDTTGVNAGGLIRNNADVDEGMEEDSQMPLDHTDNTPVTHSREFEAVDD-HTPPT 105
>SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = +1
Query: 373 RQSSHSKDALREVFDTDSSSAQDETVPAQDQRANRNAIRLEPPPS 507
+Q S +L DTD+ S Q VP QD N NA PPPS
Sbjct: 337 QQQGFSGPSLAVGGDTDTPSYQGADVPDQDVEGNENA--APPPPS 379
>SB_49929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Frame = +3
Query: 423 LIIRPGRDCSRPRS-----TCKQECHQARATTFHRHLVTTTARSAVYPPDELD 566
L + R CSR RS T + HQ RA F + AR VYP D +D
Sbjct: 16 LTVEQRRRCSRARSRGMGLTIIMDEHQIRAQRFKGKRLDLVARKGVYPYDYMD 68
>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 432 RPGRDCSRPRSTCKQECHQARATTFHRHLVTTTARSAVYPPDELD 566
RP D +RP + + + H R+ T RH T T R A P ++ D
Sbjct: 92 RPTNDTARPTNDTQPDRHTTRSQTNKRHSQTNT-RYATRPTNDTD 135
>SB_50447| Best HMM Match : ProQ (HMM E-Value=0.44)
Length = 295
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 269 LDFSNLDDDDGIRDESQAPVSHSPPYKRVRALRLFDSPHTPKTLLEKCSTPTHHP--PRT 442
+D ++ DDDD DE + PP KR R +P +P+ +K S+PT +
Sbjct: 229 VDETDEDDDD---DEDDDEIEEEPPAKRTRHSAASTTP-SPRKGRQKKSSPTKQAMGKKR 284
Query: 443 RLFPPK 460
+ PPK
Sbjct: 285 KAAPPK 290
>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
Length = 1057
Score = 29.9 bits (64), Expect = 2.6
Identities = 25/95 (26%), Positives = 38/95 (40%)
Frame = +1
Query: 298 RHQR*IPGACISQPTL*ESQSLEVVRQSSHSKDALREVFDTDSSSAQDETVPAQDQRANR 477
RHQ+ + + TL S L + +S K R++ S++ + P +D
Sbjct: 890 RHQQSSLDGSLHRSTLENSIQL---KSNSARKTTHRDLIPKISNTPKLAWSPGKDSNTIL 946
Query: 478 NAIRLEPPPSTAIW*RRQRARQSTPRTNWTSPG*P 582
P S W R R ++PR WTSP P
Sbjct: 947 TRESALPLSSRGGWVRDNRRTPNSPRFTWTSPDKP 981
>SB_18367| Best HMM Match : PEP-utilisers_N (HMM E-Value=9.5)
Length = 397
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 593 RTPYGQPGLVQFVRGVDCRARCR 525
RT G+PGL ++ + CR CR
Sbjct: 15 RTLQGEPGLTYYIETIGCRENCR 37
>SB_52179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 593 RTPYGQPGLVQFVRGVDCRARCR 525
RT G+PGL ++ + CR CR
Sbjct: 82 RTLQGEPGLTYYIETIGCRENCR 104
>SB_58888| Best HMM Match : Protamine_P1 (HMM E-Value=10)
Length = 158
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 376 QSSHSKDALREVFDTDSSSAQDETVPAQDQ 465
QS H D+ + +DTDS+ ++ +T P Q +
Sbjct: 118 QSRHDTDSTQSRYDTDSTQSRHDTNPTQSR 147
>SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1176
Score = 28.3 bits (60), Expect = 8.0
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = +3
Query: 384 TLQRRS*RSVRHRLIIRPGRDCSRPRSTCKQECHQARATTFHRHLVTTTARSAVYPPDEL 563
T++RR R+ ++ GRD SR R + + HQ T ++ + P EL
Sbjct: 972 TVKRR--RTTPFSSLLSVGRDASRARRSATKIEHQGNGETDKKY-------EKFFEPGEL 1022
Query: 564 DESRLTVRRPICQHPXLFRP 623
++ RL RR + RP
Sbjct: 1023 EKMRLKNRRSLSATSLTIRP 1042
>SB_13495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 28.3 bits (60), Expect = 8.0
Identities = 24/78 (30%), Positives = 32/78 (41%)
Frame = +3
Query: 513 HLVTTTARSAVYPPDELDESRLTVRRPICQHPXLFRPDWSSG*NKKENVALXPRNSGPWG 692
H++T +A YPP + L VRR + L WS K+ V L R W
Sbjct: 38 HILTMKGNTASYPPGDFQRPDLYVRRRWRRIQYLANTFWSRW-QKEYLVTLQERLK--WQ 94
Query: 693 RARPRSKPGAKKNLKGDS 746
R R K G LK ++
Sbjct: 95 RERKNLKVGDLVLLKDNA 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,909,408
Number of Sequences: 59808
Number of extensions: 644615
Number of successful extensions: 1667
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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