Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0254.Seq
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 35 0.055
SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0) 34 0.13
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 32 0.51
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 30 2.1
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0) 30 2.1
SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1) 29 3.6
SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 4.8
SB_55497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 35.1 bits (77), Expect = 0.055
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +3
Query: 279 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTXRTFATLCELEXVSCRESTYYAVTSLGVC 458
+ R+G P +C G C A PVC D + ++ C L+ SCR++ V S G C
Sbjct: 5285 KARDGRPECVCDGICSLVYA-PVCGTDG----QEYSNECNLQIASCRKNELIEVASRGSC 5339
>SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 325
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +3
Query: 282 VREGVPPPLCAGRCVAPPAGPVCAFDAAGTXRTFATLCELEXVSCRESTYYAVTSLGVC 458
VR G P +C C A PVC D +T+ C LE SC+ +T +V G C
Sbjct: 33 VRYGQPVCVCNEACTREYA-PVCGSDG----KTYPNPCALEVESCKTNTRISVIKKGSC 86
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 31.9 bits (69), Expect = 0.51
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 273 RARVREGVPPPLCAGRCVAPPA-GPVCAFDAAGTXRTFATLCELEXVSCRESTYYAVTSL 449
R +V +G P +C P + PVC+ T TF T C +E +C ES V
Sbjct: 132 RCQVIKGKPQCVCRDVRECPSSMDPVCST----TGETFITKCHMEVEACTESRSMMVARR 187
Query: 450 GVC 458
G C
Sbjct: 188 GEC 190
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +3
Query: 309 CAGRCVAPPAGPVCAFDAAGTXRTFATLCELEXVSCRESTYYAVTSLGVC 458
C PA VC +D +T+ + C +E CR + + LG C
Sbjct: 687 CPSESDCLPAAKVCGYDGK-VMKTYQSQCHMEAEGCRMAKDLQLIRLGSC 735
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 282 VREGVPPPLCAGRCVAPPA-GPVCAFDAAGTXRTFATLCELEXVSCRESTYYAVTSLGVC 458
V +G P +C P + PVC+ T TF T C +E +C ES V G C
Sbjct: 64 VIKGKPQCVCRDVRECPSSMDPVCST----TGETFITKCHMEVEACTESRSMMVARRGEC 119
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 279 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTXRTFATLCELEXVSC 416
+V++ P C RC+ P PVC D +T+ LCE+ SC
Sbjct: 4227 KVKDEKPVCECPSRCL-PDKEPVCGADG----KTYRNLCEIRKASC 4267
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 291 GVPPPLCAGRCVAPPAGPVCAFDAAGTXRTFATLCELEXVSCRESTYYAVTSLGVC 458
G P +C C + + PVC D +T+ CEL+ +C V S G C
Sbjct: 3964 GQPTCVCNKNCPST-SKPVCGSDG----KTYKNECELKRAACESKKNVTVASQGEC 4014
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 309 CAGRCVAPPAGPVCAFDAAGTXRTFATLCELEXVSCRESTYYAVTSLGVC 458
C C + A PVC D RT+++ C ++ +C+ T AV G+C
Sbjct: 803 CNTECPSE-ASPVCGQDG----RTYSSTCAMDARACQAQTSIAVKHPGLC 847
>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1568
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 279 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTXRTFATLCELEXVSCRESTYYAVTSLGVC 458
R ++G P +C C + PVC D T+ LC L +C ++T + G C
Sbjct: 588 RAQDGKPVCVCPPGCPSE-VKPVCGTDGV----TYDNLCSLRLKACTDNTRTRFKAFGEC 642
>SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -1
Query: 500 H*NLIIFSXFLNYSANSQ--TCDGVI-RAFATRNXLEFT*SSECPSRSGCIKGAYWSCRR 330
H N S ++ S++SQ C G++ R FA+ +E S++C S G +CRR
Sbjct: 335 HKNEQSLSSYIKDSSSSQKRACSGILSRPFASSETIEMENSNDCKQGSLSRAGGEVNCRR 394
>SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1)
Length = 556
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 294 PPRGPSLGPAHPGPHIRCADFFDAPQSRWN 205
P + P+L PA+P + + FF AP+ WN
Sbjct: 48 PLQIPTLPPANPSQYFSTSFFFWAPKRTWN 77
>SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 294 PPRGPSLGPAHPGPHIRCADFFDAPQSRWN 205
P + P+L PA+P + + FF AP+ WN
Sbjct: 265 PLQIPTLPPANPSQYFSTSFFFWAPKRTWN 294
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +3
Query: 321 CVAPPAGPVCAFDAAGTXRTFATLCELEXVSCRESTYYAVTSLGVC 458
C+ P + A T+ + C LE SC+ Y + G C
Sbjct: 1861 CICPTCPKAKDYLCASNNLTYMSKCHLERASCQLGRYLTIKQKGKC 1906
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 283 SARGCRRRCVQGGAWPRRQDQYAPLMQPEREGH 381
S R C+RRCV+GG R + + M R+ H
Sbjct: 2164 SRRQCQRRCVKGGPQSTRYNHHINFMGCFRDRH 2196
>SB_55497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 356 KGAYWSCRRGHAPPCTQRRRHPLADPRSDQLTRGLISGALTS 231
+G CR G + PC+Q HP S Q + GL+ +T+
Sbjct: 126 RGCTEDCRPGPSQPCSQ-NHHPPKTLASQQPSMGLVVSIITT 166
>SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 340 PAGGATHRPAHSGGGTPSRTLARTSSP 260
PAG R AH+ P+R AR +SP
Sbjct: 304 PAGNEASRTAHASRPAPTRETARETSP 330
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,265,644
Number of Sequences: 59808
Number of extensions: 423745
Number of successful extensions: 1322
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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