Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0248.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95)                33   0.35 
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              31   0.82 

>SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95)
          Length = 209

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +3

Query: 369 ADCXCFDVDSTVLQDXGIXXLGKXCG 446
           AD  CFDVDSTV+    I  L   CG
Sbjct: 16  ADAVCFDVDSTVVTGEAIDELASFCG 41


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
 Frame = -1

Query: 695  PXPEXQXSPGLTPLLSGXKLFPXKPGXYRGIXPKREIFPKEXPXNGPDVKPXMMPXXFXK 516
            P P+ Q +  ++P      + P +P  +    P  ++FP   P   P + P M+P     
Sbjct: 2571 PPPQPQMNAAMSPDRRWPIVAPMQPPFFGPQLPPPDMFP---PQMMPPMVPMMLPPMLPL 2627

Query: 515  PSRXV-IWPPXXFRRPVL-XPXSPFPAXLAQXXD 420
            P   + + P    + P L  P  PFP   A   D
Sbjct: 2628 PPPGLPMQPEAPVQPPPLPPPGGPFPPVAADQGD 2661


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,995,822
Number of Sequences: 59808
Number of extensions: 249789
Number of successful extensions: 328
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)