Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0245.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)                112   4e-25
SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)          112   4e-25
SB_54973| Best HMM Match : RVP (HMM E-Value=2.6)                       29   3.3  
SB_17353| Best HMM Match : Transposase_11 (HMM E-Value=1.3)            29   5.8  
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)
          Length = 278

 Score =  112 bits (269), Expect = 4e-25
 Identities = 55/101 (54%), Positives = 71/101 (70%), Gaps = 4/101 (3%)
 Frame = +1

Query: 259 HDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIEFG 438
           HDP W+ EQ + A F   G  IG+ E+D M ++ I IFEI+E+AWA  D AL+DMKIEFG
Sbjct: 134 HDPFWTYEQCVEAAFEIGGRKIGKHELDIMSESAIAIFEIIERAWATVDVALVDMKIEFG 193

Query: 439 VDTE-GSIVLADVIDSDSWRLWPSVIKD*WLDKQV---LPE 549
           V+ + G ++LADV+D+DSWR+WPS  K    DKQV   LPE
Sbjct: 194 VNRKTGELMLADVVDNDSWRIWPSGDKRLMRDKQVYRNLPE 234



 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 42/64 (65%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
 Frame = +2

Query: 68  GIKTAFVKIASET--AFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPEGFRFTPPKQETF 241
           G+KT FVK       AF+   CEMIP+E V RR+ATGSFLKR PGV EG+RFTPPKQE F
Sbjct: 68  GLKTHFVKRCESDPEAFIGIACEMIPLEVVCRRIATGSFLKRYPGVKEGYRFTPPKQEFF 127

Query: 242 FKDD 253
            KDD
Sbjct: 128 LKDD 131


>SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)
          Length = 265

 Score =  112 bits (269), Expect = 4e-25
 Identities = 55/101 (54%), Positives = 71/101 (70%), Gaps = 4/101 (3%)
 Frame = +1

Query: 259 HDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIEFG 438
           HDP W+ EQ + A F   G  IG+ E+D M ++ I IFEI+E+AWA  D AL+DMKIEFG
Sbjct: 44  HDPFWTYEQCVEAAFEIGGRKIGKHELDIMSESAIAIFEIIERAWATVDVALVDMKIEFG 103

Query: 439 VDTE-GSIVLADVIDSDSWRLWPSVIKD*WLDKQV---LPE 549
           V+ + G ++LADV+D+DSWR+WPS  K    DKQV   LPE
Sbjct: 104 VNRKTGELMLADVVDNDSWRIWPSGDKRLMRDKQVYRNLPE 144



 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 32/41 (78%), Positives = 35/41 (85%)
 Frame = +2

Query: 131 MIPIEWVTRRLATGSFLKRNPGVPEGFRFTPPKQETFFKDD 253
           MIP+E V RR+ATGSFLKR PGV EG+RFTPPKQE F KDD
Sbjct: 1   MIPLEVVCRRIATGSFLKRYPGVKEGYRFTPPKQEFFLKDD 41


>SB_54973| Best HMM Match : RVP (HMM E-Value=2.6)
          Length = 255

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 188 NPGVPEGFRFTPPKQETFFKDDETTIPNGQRSKSFQPNSIITVF 319
           NP +    RF P ++ TFF D+   +  G   K F P  ++  F
Sbjct: 53  NPNLDNNDRFRPVRR-TFFSDEAIQVNEGPPRKCFPPTEVMFNF 95


>SB_17353| Best HMM Match : Transposase_11 (HMM E-Value=1.3)
          Length = 200

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 277 LTIGDRGFVILEERLLFWRSEPEAFWYTR 191
           L + DRGF I  E L+F+R+EP    +TR
Sbjct: 109 LVMADRGFTI-NESLMFYRAEPAIPAFTR 136


>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 188 NPGVPEGFRFTPPKQETFFKDDETTIPNGQRSKSFQPNSII 310
           NP +    RF P  + TFF D+   +  G   K F P  ++
Sbjct: 319 NPNLDNNDRFRPVSR-TFFSDEVIQVDEGPPRKCFPPTEVM 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,212,081
Number of Sequences: 59808
Number of extensions: 485321
Number of successful extensions: 829
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)