Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0242.Seq
(797 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 151 8e-37
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.82
SB_52533| Best HMM Match : rve (HMM E-Value=2) 31 1.4
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 30 1.9
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 4.4
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 4.4
SB_47521| Best HMM Match : RVT_1 (HMM E-Value=7.2e-24) 29 5.8
SB_20830| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24) 29 5.8
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 7.6
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 28 7.6
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 7.6
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 151 bits (365), Expect = 8e-37
Identities = 74/96 (77%), Positives = 82/96 (85%), Gaps = 1/96 (1%)
Frame = +1
Query: 196 QTREHLLVF-FTNQRIRDH*FFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 372
+T EH+ +F + FFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24 KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83
Query: 373 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG 480
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWG
Sbjct: 84 HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWG 119
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/36 (83%), Positives = 32/36 (88%)
Frame = +2
Query: 146 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
WVPVTKLGRLV++ KI LE IYLFSLPIKEFEIID
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIID 43
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = -3
Query: 447 QLSKDNSASNGSGDFLAALXTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 268
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292
Query: 267 RAEEE 253
R ++E
Sbjct: 293 RNQDE 297
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = -3
Query: 447 QLSKDNSASNGSGDFLAALXTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 268
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576
Query: 267 RAEEE 253
R ++E
Sbjct: 577 RNQDE 581
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 232 QRIRDH*FFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 387
QR+R L N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 81 QRLRSKANGLVERTNRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 232 QRIRDH*FFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 387
QR+R L N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 141 QRLRGKANGLVERTNRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 274 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 387
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 274 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 387
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 274 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 387
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 274 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 387
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_47521| Best HMM Match : RVT_1 (HMM E-Value=7.2e-24)
Length = 338
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 333 CALSGTCLFLYRHDLKNLIIQGRAEEESMISNSL 232
C LS T LY HDL + + + + + E ++ NS+
Sbjct: 111 CVLSTTLFNLYLHDLSDSLRELQPQREGLVINSI 144
>SB_20830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 28.7 bits (61), Expect = 5.8
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 9/135 (6%)
Frame = +2
Query: 188 KIDK--LESIYLFSLPIKEFEIIDSSSARP*MMRFLRSCLYRNKHVPDSAHVSRHLLPLA 361
++DK +++YL ++ ++ + I++ +A F+ C NK + S H+
Sbjct: 214 RVDKGSRDTVYLPNMEVRRRDNINADTASR-DQPFVTPCKTYNKEIGTSVETRLHVKEGR 272
Query: 362 TTTVILVWVXSAARK----SPLPFEALLS--LLSCQFYQSEE-GTGGNKIXKPHNRPLQG 520
T T V + K SP +++ LL Q + EE ++ PHN+P+
Sbjct: 273 TKTGAKVNIRKGLGKRRKSSPAMINKVINNFLLQIQEARLEELRNKDEEVDNPHNKPIPS 332
Query: 521 HRQXLXP*KFRLNXC 565
H L RL C
Sbjct: 333 HIPELKCEPTRLWRC 347
>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
Length = 963
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 449 DSLARIIAPRMAVATSLLHXTPKPI*PLLSPMATNALKRVRCPA 318
D+L+ IAP A SLL + P+++P A +AL ++ P+
Sbjct: 365 DALSLQIAPSANNALSLLKGAYDALSPMIAPSANDALSLLKAPS 408
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 7.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 324 TAHTFQGICCHWRQQRSYW 380
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = -3
Query: 420 NGSGDFLAALXTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 289
N G LA N+ +V NG K + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 322 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 411
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,691,730
Number of Sequences: 59808
Number of extensions: 424686
Number of successful extensions: 1030
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -