Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0239.Seq
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36351| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08)           31   1.3  
SB_24199| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_46243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_1739| Best HMM Match : Beta-lactamase (HMM E-Value=3.7e-22)         29   5.4  
SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_3464| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_36351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 206 GMFKNIKDVNSTNTSDNQLIKLVSRLAEADRDTATSSIPY 87
           G +K + D  S    +  L KLV  L + D D A SS+PY
Sbjct: 108 GGWKTLMDAVSKFADNMSLTKLVVSLKDTDPDDAFSSVPY 147


>SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08)
          Length = 457

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 206 GMFKNIKDVNSTNTSDNQLIKLVSRLAEADRDTATSSIPY 87
           G +K + D  S    +  L KLV  L + D D A SS+PY
Sbjct: 269 GGWKTLMDAVSKFADNMSLTKLVVSLKDTDPDDAFSSVPY 308


>SB_24199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 145 SSCPGSPRRIAIPRQVPSRTTQ*LVRCKQFHRRSLNYNINQKSS 14
           S CPG P   A+P+ +PSR  + L +  + H  S+      KS+
Sbjct: 53  SRCPGKPPLFALPKPLPSRIDEALDKIDK-HLLSIAAKAQNKSA 95


>SB_46243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 148 LSSCPGSPRRIAIPRQVPSRTTQ*LVRCKQFHRRSLN 38
           +  CP  P  +++PR +P    Q LVR + + ++ +N
Sbjct: 123 IKKCPILPPLVSLPRDLPKDLNQSLVRIEDYLKKLVN 159


>SB_1739| Best HMM Match : Beta-lactamase (HMM E-Value=3.7e-22)
          Length = 539

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 145 SSCPGSPRRIAIPRQVPSRTTQ*LVRCKQFHRRSLNYNINQKSS 14
           S CPG P   A+P+ +PSR  + L +  + H  S+      KS+
Sbjct: 62  SRCPGKPPLFALPKPLPSRIDEALDKIDK-HLLSIAAKAQNKSA 104


>SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 644 CPNLNYLXAAVLEK--CQFYSGALRDYFQASRYYH*T 540
           CP+L YL  +  E+  CQ + G  RD+F   +Y H T
Sbjct: 598 CPHL-YLCLSGQERFGCQDHEGTKRDFFMPMQYLHGT 633


>SB_3464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 361  ILIY*TV*ECTLH*ICVQRYLNTSLE--TSLRSLQISPIQKL 242
            + +Y  V EC  H  CV+R+ N  L   T LR  +  P ++L
Sbjct: 1042 VYVYRPVVECYAHRECVKRFANAILRGPTDLRKTERLPFRRL 1083


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,163,259
Number of Sequences: 59808
Number of extensions: 489939
Number of successful extensions: 1109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)