Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0235.Seq
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36713| Best HMM Match : ResIII (HMM E-Value=1)                      29   2.7  
SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)           29   2.7  
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_7259| Best HMM Match : ResIII (HMM E-Value=0.21)                    28   8.3  
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_36713| Best HMM Match : ResIII (HMM E-Value=1)
          Length = 433

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 379 SNVTMVATSQHYGFRKKSRPMENSRGEGRWAPKK 480
           S V +V  +  YG R+  RP    R E  W PK+
Sbjct: 269 SGVRLVERNPRYGERRHKRPGYEWRPEAAWGPKR 302


>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
          Length = 661

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = -3

Query: 563 PAEXNKNPTXXNSPAFKFL*TDXRFXXFFXGAHLPSPRLFSIGRLF 426
           PA  +K+ T  N PAF  + T   F  F  G  L S  L +I RLF
Sbjct: 403 PAHPSKDET--NHPAFVIIFTLITFLYFTVGLALVSSALLAISRLF 446


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 122 FYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSK 256
           FYY+H+ S      L++  +    P+FA +  + +++ +LP F K
Sbjct: 103 FYYDHLMSRDGSKPLRVRSMVGLVPLFACLVLEDEFVQKLPGFKK 147


>SB_7259| Best HMM Match : ResIII (HMM E-Value=0.21)
          Length = 956

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 379 SNVTMVATSQHYGFRKKSRPMENSRGEGRWAPKKKXXKRXSV*RNLKAGEFXKV 540
           S V +V  +  YG  +  +P    R E  W PK+K     S+  +L A    K+
Sbjct: 503 SGVKLVERNPRYGEWRHKKPGYEWRPEAAWGPKRKPSTAPSLPCDLVAATSAKM 556


>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 379 SNVTMVATSQHYGFRKKSRPMENSRGEGRWAPKK 480
           SNV +V  +  YG  +  +P    R E  W PKK
Sbjct: 689 SNVKVVGRNPTYGEWRHKKPGYEWRPEAAWGPKK 722


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,998,459
Number of Sequences: 59808
Number of extensions: 421078
Number of successful extensions: 1494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)