Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0230.Seq
(459 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40911| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_29731| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.80
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 29 1.4
SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_23501| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 29 1.8
SB_53179| Best HMM Match : BTB (HMM E-Value=3.3e-21) 29 1.8
SB_7530| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) 28 3.2
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 28 4.3
SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1) 28 4.3
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 27 5.6
SB_3831| Best HMM Match : RVT_1 (HMM E-Value=0.0028) 27 5.6
SB_32118| Best HMM Match : PPC (HMM E-Value=0.39) 27 7.5
SB_27478| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38) 27 7.5
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05) 27 7.5
SB_11740| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_56133| Best HMM Match : FecCD (HMM E-Value=0) 27 9.9
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4) 27 9.9
SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7) 27 9.9
>SB_40911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 30.7 bits (66), Expect = 0.61
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 258 RVGPVHRPAVRALPGPGMRCTPGAV 184
R PV +PA RALP PG R P V
Sbjct: 10 RPSPVGKPAKRALPSPGSRKLPSPV 34
>SB_29731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 30.7 bits (66), Expect = 0.61
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 268 LYPAGWPCSPARCTRFTWPWNALHAWRCG 182
L P WPC P R T H W CG
Sbjct: 192 LTPNAWPCFPVTAQRRTLLATETHQWSCG 220
>SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 30.3 bits (65), Expect = 0.80
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 340 HFQERCRYFRK*PENCCHHKEEPRLYPAGWPCSPARCTRFT 218
H++ R F + + +KEE +PAG P +P RC+ T
Sbjct: 700 HWERWARLFEEYIKTFLKYKEEASGWPAGAPPTPTRCSTST 740
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSG--PTNLQRANK-FGGAPGP-GSP 450
G+ G + G G P G+ G + G P +L K GAPGP GSP
Sbjct: 49 GDPGPQGDQGPQGPPGGSTQTAGGIKGPDPNDLAAGIKGSNGAPGPRGSP 98
>SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = -3
Query: 256 GWPCSPARCTRFTWPWNALHAWRCGPWSPSPPTRGRSAQTLSPT--ARVRACEISTW 92
G PCS + F W W SP+ PT S +S T R C + W
Sbjct: 203 GEPCSGRTTSGFDGAWTVERCWTYTRQSPTSPTGVGSTSDVSGTTWCRRTTCALCLW 259
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSPEA 456
G+TG + GQ G P P P + GP + G PG P+A
Sbjct: 125 GDTGPLGPKGQPGSPGIDIPGPKGMDGPPGEKGLPGVQGDPGIKGPKA 172
Score = 27.9 bits (59), Expect = 4.3
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Frame = -1
Query: 363 PRGEPVLPIFRNAAGI-----SESDPRIVATTRRSRGCTRRVGPVHRPAVRALPGPGMRC 199
P G P LP R G+ + P + SRG T +GP P + LPG
Sbjct: 37 PEGSPGLPGERGTGGVPGPKGKQGAPGTIGFPG-SRGDTGDLGP---PGAKGLPGAQQYG 92
Query: 198 TPGAVGLGAP 169
PG +G P
Sbjct: 93 LPGPLGEAGP 102
>SB_23501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 165 GEGLQG-PQRQACSAFQGQVKRVQRAGEQGQPAGYNRGSSLWWQQFSGH 308
G+ L G QRQ S + GQ ++ G+Q QP+GY + WQQ SG+
Sbjct: 298 GQQLSGYGQRQQPSGY-GQRQQPSGYGQQQQPSGYGQ-----WQQPSGY 340
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 186 QRQACSAFQGQVKRVQRAGEQGQPAGY--NRGSSLWWQQFSGHFRKYRQRS 332
Q+Q S + GQ ++ G++ QP+GY + SS + QQ S + Y+Q S
Sbjct: 387 QQQQSSGY-GQQQQPSGYGQRQQPSGYGQQQQSSGYGQQQSYQYPSYQQPS 436
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSPEA 456
G+TG + GQ G P P P + GP + G PG P+A
Sbjct: 125 GDTGPLGPKGQPGSPGIDIPGPKGMDGPPGEKGLPGVQGDPGIKGPKA 172
Score = 27.9 bits (59), Expect = 4.3
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Frame = -1
Query: 363 PRGEPVLPIFRNAAGI-----SESDPRIVATTRRSRGCTRRVGPVHRPAVRALPGPGMRC 199
P G P LP R G+ + P + SRG T +GP P + LPG
Sbjct: 37 PEGSPGLPGERGTGGVPGPKGKQGAPGTIGFPG-SRGDTGDLGP---PGAKGLPGAQQYG 92
Query: 198 TPGAVGLGAP 169
PG +G P
Sbjct: 93 LPGPLGEAGP 102
>SB_53179| Best HMM Match : BTB (HMM E-Value=3.3e-21)
Length = 604
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 334 QERCRYFRK*PENCCHHKEEPRLYPAGWP 248
++R R FR+ P C+H EP L P P
Sbjct: 257 KKRFRMFRRSPSKLCNHHPEPPLLPVPVP 285
>SB_7530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 165 GEGLQG-PQRQACSAFQGQVKRVQRAGEQGQPAGYNRGSSLWWQQFSGH 308
G+ L G QRQ S + GQ ++ G+Q QP+GY + WQQ SG+
Sbjct: 24 GQQLSGYGQRQQPSGY-GQRQQPSGYGQQQQPSGYGQ-----WQQPSGY 66
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 186 QRQACSAFQGQVKRVQRAGEQGQPAGY--NRGSSLWWQQFSGHFRKYRQRS 332
Q+Q S + GQ ++ G++ QP+GY + SS + QQ S + Y+Q S
Sbjct: 77 QQQQSSGY-GQQQQPSGYGQRQQPSGYGQQQQSSGYGQQQSYQYPSYQQPS 126
>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
Length = 3561
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 322 GSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSPEAF 459
G + NG DG P G GS+ N+ + A G GSP+ F
Sbjct: 1757 GILSANGADGLPQGGGGSVGSIWVHCNIIKGYGSIRANGGGSPQEF 1802
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPFPGSVS-----GPTNLQRANKFGGAPGPGSPE 453
G+ G+ G G P+GT PG GPT + + G PGP PE
Sbjct: 760 GSDGAQGNPGPQG-PTGTRGIPGPQGKNGKMGPTGPRGPSGKNGEPGPQGPE 810
>SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 285
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 253 WPCSPARCTRFTWPWNALHAWRCGPWSPSPPTRGRSAQTLSP 128
+P + C T+P ALHA R SPP+ R +LSP
Sbjct: 18 FPVTALTCKTCTFPVTALHARRV--LHLSPPSHARRVLSLSP 57
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGT-----NPFPGSVSGPTNLQRANKFGGAPGPGSP 450
GN G V G G P+G P P ++GP G PGP P
Sbjct: 665 GNAGGVGYQGNHGNPAGVQGPNGQPGPPGINGPPGQIGEMGPPGLPGPPGP 715
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGT-----NPFPGSVSGPTNLQRANKFGGAPGPGSP 450
GN G V G G P+G+ P P ++GP G PGP P
Sbjct: 750 GNAGGVGCQGHHGNPAGSQGPNGQPGPPGINGPPGQVGEMGPPGLPGPPGP 800
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGT-----NPFPGSVSGPTNLQRANKFGGAPGPGSP 450
GN G V G G P+G+ P P ++GP G PGP P
Sbjct: 835 GNAGGVGCQGNHGNPAGSQGPNGQPGPPGINGPPGQVGEMGPPGLPGPPGP 885
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPS--GTNPFPGSVSGPTNLQRANKFGGAPGP 441
G G V G G P G + P + GP L N G PGP
Sbjct: 146 GPPGDVGPPGNPGGPGLQGNHGNPAGIQGPNGLPGPNGPLGPPGP 190
>SB_3831| Best HMM Match : RVT_1 (HMM E-Value=0.0028)
Length = 379
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 181 PWSPSPPTRGRSAQTLSPTARVRACEISTWVLFVTK 74
PWS + P GR + T + C+ + W L +T+
Sbjct: 120 PWSHATPPSGRPLSRVPMTPNMPECKETDWGLVLTE 155
>SB_32118| Best HMM Match : PPC (HMM E-Value=0.39)
Length = 277
Score = 27.1 bits (57), Expect = 7.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 401 FVGPLTLPGNGLVPEGNPSCP 339
++GP T+PG ++P+ P+ P
Sbjct: 236 YIGPETIPGPEMIPKSTPTDP 256
>SB_27478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPSGTNPF-------PGSVSGPTNLQRANKFGGAPGPGSPE 453
G+TG+ NG G T P P +GPT+ N GA GP P+
Sbjct: 85 GDTGATGPNGPKGDTGATGPAGPTGPTGPKGDTGPTDPTGPNGDTGATGPTGPK 138
>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3133
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 57 KYYNKNLVTNRTHVEISQARTRAVGESVCADLPLVG 164
KYY NL + TH I A+ + + A L +G
Sbjct: 2273 KYYRNNLYAHATHASIDDAQFEKYWKEISAALVALG 2308
>SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38)
Length = 1935
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 324 AGISESDPRIVATTRRSRGCTRRVGPVHRPAVRALP 217
+G+SE DPR + + C +R PV + + LP
Sbjct: 1584 SGLSERDPRYEVSLKSCFDCRKRQSPVVQQKMANLP 1619
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 141 CADLPLVGGEGLQGPQRQACSAFQG 215
CA P G LQG R CS FQG
Sbjct: 2019 CASNPCNNGTCLQGIGRYDCSCFQG 2043
>SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)
Length = 346
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/51 (29%), Positives = 19/51 (37%)
Frame = +1
Query: 307 TFGNTGSVPENGQDGFPSGTNPFPGSVSGPTNLQRANKFGGAPGPGSPEAF 459
T G GS +G G+P P S GP + G GP P +
Sbjct: 55 TKGPPGSQGLSGVQGYPGAPGPRGRSPPGPPGIPGPRGLPGYRGPKGPPGY 105
>SB_11740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 395 GPLTLPGNGLVPEGNPSCPFSGT 327
GP T+PG ++P+ P+ P++ T
Sbjct: 4 GPETIPGPDMIPKSTPTDPWTRT 26
>SB_56133| Best HMM Match : FecCD (HMM E-Value=0)
Length = 357
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 420 LVGPLQICWSTNAARKWVSPRGEPV 346
L+G L + W AAR W++P+ P+
Sbjct: 242 LLGALFLVWVDVAARTWLAPQDLPI 266
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Frame = +1
Query: 313 GNTGSVPENGQDGFPS--GTNPFPGSVS--GPTNLQRANKFGGAPGPGSP 450
GN G G G P G N PG GP N G PGP P
Sbjct: 1151 GNPGLPGAQGLKGEPGRDGQNGSPGRKGEPGPAGKNGINGLDGPPGPDGP 1200
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 315 SESDPRIVATTRRSRGCTRRVGPVHRPAVRALPG 214
S ++PR ++ R + + P H+ AVRA PG
Sbjct: 28 SRNNPRTRSSGVRRQNLSSLANPPHKKAVRAAPG 61
>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
Length = 311
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 165 GEGLQGPQRQACSAFQGQVKRVQRAGEQGQPAGYNRGSSLWWQQFSGHFRKYRQRS*KWA 344
G+G +++A G K+ A EQG+ AG + QQ K R+R+ K
Sbjct: 41 GKGATEQEKEATEQGNGASKQGTGASEQGKGAGEQEKGEI--QQERKRLNKERKRANKET 98
Query: 345 RRV 353
RV
Sbjct: 99 ERV 101
>SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)
Length = 535
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 147 DLPLVGGEGLQGPQRQACSAFQGQVKRVQRAGEQGQPAGYNRGSSLWWQQFSGHF 311
DLP + + G RQ F GQ + + + RG+ + W F GHF
Sbjct: 31 DLPPCDSQFVGGEARQQSQKF-GQNTCEKGVNPEKKSCKQLRGTKVTWPPFKGHF 84
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,192,599
Number of Sequences: 59808
Number of extensions: 310978
Number of successful extensions: 1157
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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