Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0207.Seq
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)               35   0.041
SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36)                   29   2.0  
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_55129| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)                  27   6.2  
SB_12671| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)
          Length = 783

 Score = 34.7 bits (76), Expect = 0.041
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = -1

Query: 446 ENEKHRSNSELQY*AASRRHFPTSEPRQRTASRALEDRGATTRSEAQRAL---YVHTRQR 276
           E EK+  + EL+    S  HF   E ++R   RA+ED+    +SE ++ L     H   R
Sbjct: 332 EEEKYGKDGELRMLKESLAHFQAEEAKKREQIRAMEDQRKQEQSEKEKELQKQVEHLTTR 391

Query: 275 SVARERRSVTSNAHRSSH 222
              +E+    +   R  H
Sbjct: 392 LKFQEQEIAQAMEQRKKH 409


>SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36)
          Length = 852

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +2

Query: 197 VISEPPYPNENCDGRLKSRFSVPERRSSDEYGRRARVELRSASWHRGLQELWRL 358
           + +EPP+   +C G  +SR     RR+S E  R  RV     + HR L +L RL
Sbjct: 686 IATEPPWFGGDCFGISESRRPGISRRTSAESSRN-RVRYCKHTRHRLLSQLKRL 738


>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -3

Query: 405 SGQSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERRSGTEKRDFKRPS 232
           S +SP+ P  RTT   S ++S       + R++ R    +SS +RR+ +E     +P+
Sbjct: 155 SSKSPSPPTNRTTQGESPKTSSSGHGQHSSRTAVRRSASFSSSQRRT-SESESRSKPA 211


>SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 368 RQRTASRALEDRGATTRSEAQRALYVHTRQRSVARERRSVTSNAHR 231
           ++   ++ LED  A    E  + L V  +QR V  E R   + A R
Sbjct: 155 QEELRNKILEDVQALQEDERNKTLQVRNKQREVEIEHREYAARAER 200


>SB_55129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 320 ASWHRGLQELWRLFAVVVRMLGNVGDWPLNIVTRCSNG 433
           A+W  G  E WRL  +     G++  W L ++   S G
Sbjct: 62  ATWSTGDLEYWRLGVLATWSTGDLEYWRLGVLATWSTG 99



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 320 ASWHRGLQELWRLFAVVVRMLGNVGDWPLNIVTRCSNG 433
           A+W  G  E WRL  +     G++  W L ++   S G
Sbjct: 78  ATWSTGDLEYWRLGVLATWSTGDLEYWRLGVLATWSTG 115


>SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)
          Length = 259

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 211 RLTDHLTTASNGSDSSSRGTEYST 140
           RLT++  +ASNGSD  +   E ST
Sbjct: 2   RLTNYTLSASNGSDDETSNKEVST 25


>SB_12671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 313 SLRVVAPRSSRALEAVRCRGSDVGKCRRLAA*YCNSLFERC 435
           ++RV+APR + A E      S+   C R AA   +   E C
Sbjct: 57  NIRVIAPRKATASELAAFHSSEYVNCMRRAAEAVSDGSEEC 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,060,894
Number of Sequences: 59808
Number of extensions: 249729
Number of successful extensions: 887
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)