Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30293.Seq
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              123   2e-28
SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14)                31   1.0  
SB_24301| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_39010| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_872| Best HMM Match : CUB (HMM E-Value=3.1e-07)                     29   4.1  
SB_10533| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  123 bits (296), Expect = 2e-28
 Identities = 62/102 (60%), Positives = 76/102 (74%)
 Frame = +1

Query: 256 TNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGN 435
           TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  
Sbjct: 36  TNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNT 95

Query: 436 VPRRLGPQTCFQNP*AVQP*QRR*LRRYVVKTRASQAXEGKE 561
           +PRRLGP+   +        +   +R+YV++ R     EGK+
Sbjct: 96  IPRRLGPKRVGKIRKMFNLSKEDDVRQYVIR-RPLPEKEGKK 136



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 54/147 (36%), Positives = 71/147 (48%), Gaps = 1/147 (0%)
 Frame = +2

Query: 155 EVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGVRQTAVFVF*CQRATHVTDRAAMERENV 334
           EV  + L DEWKG V R+ GGND QGFPMK G+           +  H   R     E  
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKG-HSCYRPRRTGERK 60

Query: 335 NQFVDVLLTPISRSWLLLLCARVPRKFLD*LME-MYPAV*VPKRASKIRKLFNLSKEDDY 511
            + V   +     S L L+  +   + +  L +   P    PKR  KIRK+FNLSKEDD 
Sbjct: 61  RKSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDV 120

Query: 512 VVMSSKRVLPKPXKGKKMLNPXIRAPK 592
                +R LP+  +GKK  +   +APK
Sbjct: 121 RQYVIRRPLPE-KEGKKAKS---KAPK 143


>SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14)
          Length = 338

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 384 CYCAQGCPGNSWID*WKCTPPSRSPNVLPKSVSCSTLAKKMITSLCRQNA 533
           C C QG  G +    W+   P  S +V P+ V+ +TL K+ I   CR ++
Sbjct: 144 CECPQGYTGAACETGWRLKNPITSSDVKPEKVTQNTLNKR-IEKKCRTSS 192


>SB_24301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 473 IRKLFNLSKEDDYVVMSSKRVLPKPXKGKKMLNPXIRAPKNPXGS 607
           IRK+  L +  D+++  ++R  P+  KGK M+ P I  P N  G+
Sbjct: 31  IRKIATL-RYHDFII--ARRAHPQNTKGKAMVEPCIPVPANSTGN 72


>SB_39010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 473 IRKLFNLSKEDDYVVMSSKRVLPKPXKGKKMLNPXIRAPKNPXGS 607
           IRK+  L +  D+++  ++R  P+  KGK M+ P I  P N  G+
Sbjct: 31  IRKIATL-RYHDFII--ARRAHPQNTKGKAMVEPCIPVPANSTGN 72


>SB_872| Best HMM Match : CUB (HMM E-Value=3.1e-07)
          Length = 423

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +3

Query: 387 YCAQGCPGNSWID-----*WKCTPPSRSPNVLPKSVSCSTLAKKMITSLCR 524
           YC  G PGN+  D       + T PS  PN  P +  CS L K  + SL R
Sbjct: 190 YCGDGVPGNTSHDIDGTIPGEITSPS-YPNPYPHNQDCSWLIKASLGSLVR 239


>SB_10533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 402 CPGNSWID*WKCTPPSRSPNVLPK 473
           C G  W+D ++ TPPS S   L K
Sbjct: 55  CVGGGWLDFYQRTPPSSSTRPLEK 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,810,129
Number of Sequences: 59808
Number of extensions: 438481
Number of successful extensions: 1095
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)