Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30272.Seq
         (780 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      114   7e-26
SB_10506| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)             35   0.064
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59)             29   3.2  
SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)                 29   4.2  
SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6)                      29   5.6  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   9.8  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  114 bits (275), Expect = 7e-26
 Identities = 59/89 (66%), Positives = 70/89 (78%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLS 601
           +VRK+LQL RLRQINNGVFVRLNKAT NM      YIA+GYPNLKSVREL+YKRG+ K+ 
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVD 160

Query: 602 GQRIPIHFPNSIVEKRLLKHNIYLCLKDL 688
            QR+ +   NSIVEK L KH I +C++DL
Sbjct: 161 KQRVAL-TDNSIVEKVLGKHGI-ICVEDL 187



 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 44/69 (63%), Positives = 53/69 (76%)
 Frame = +3

Query: 243 HQEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSP 422
           H + +EIFKRAE+YVKEYR KE DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSP
Sbjct: 41  HGKRKEIFKRAEKYVKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSP 100

Query: 423 KSVKFCNCL 449
           K  K    L
Sbjct: 101 KVRKILQLL 109


>SB_10506| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)
          Length = 666

 Score = 35.1 bits (77), Expect = 0.064
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = -3

Query: 661 VFKEPLLNNAVWKVNWYTLSTQLGESTFVY*LTXTL*VGVSPSNVKARRYVHIHSSLIQT 482
           VFKEPLL   +      ++  +L    F Y  T     G+SP+ +  +R +    SL++ 
Sbjct: 449 VFKEPLLKQVIQGTKGMSMKHRLASFLFRYRTTPHSTTGMSPAELMVKRQLRTRLSLVKP 508

Query: 481 YKHTIVYLAQSKQ 443
           +    +   Q KQ
Sbjct: 509 HLADAIENKQEKQ 521


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 328 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 465
           PDK A+  TTT P   +   ++     T + R P  S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408


>SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59)
          Length = 810

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
 Frame = +2

Query: 494 ATVNMYVSPSLYIAWGYP-NLKSVRELVYKRGFAK-------LSGQRIPIHFPNSIVEKR 649
           AT+ +  + +L++A  Y   LK VRE++ +R F K       L  Q +P H    + E +
Sbjct: 471 ATLYITRNGNLHLAGFYSAKLKGVREIMPRRVFRKPTNFDLPLCSQSVPSHSQTPLKEDK 530

Query: 650 LLKHN 664
           LL+H+
Sbjct: 531 LLQHH 535


>SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)
          Length = 458

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/72 (30%), Positives = 36/72 (50%)
 Frame = +1

Query: 232 RSSAIKKKGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVST 411
           +++A  K   ++ G + TSR+T       S    K A   T +   +P+W L+S + VS 
Sbjct: 155 KTTASIKNVPTTNGPSKTSRSTDGEESAGSTHTKKPAKDDTDSSADEPDWDLTS-AFVSR 213

Query: 412 KFHRSP*SSATV 447
              R+P S+ TV
Sbjct: 214 AAGRNPTSTTTV 225


>SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6)
          Length = 379

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -2

Query: 731 LETFSPNSGRIXGNGGPSNTDKCCV*GASSQQCCLESELVYVVHSAWRIHVCILTH 564
           +E F+PN+     N     +D+      + + C + +E+  +V   WR+H C   H
Sbjct: 54  VEVFTPNASTFVNN---HLSDQLKTPLRNGEVCEITNEITSIVGKTWRVHCCSPFH 106


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 303 KERDEIRLARQARNRGNYYVP 365
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,844,353
Number of Sequences: 59808
Number of extensions: 464511
Number of successful extensions: 1060
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)