Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30259.Seq
(535 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 138 2e-33
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 31 0.78
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6) 29 1.8
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1) 29 1.8
SB_37902| Best HMM Match : RPH3A_effector (HMM E-Value=7.6e-10) 29 2.4
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_10084| Best HMM Match : Cadherin (HMM E-Value=2.4e-06) 29 3.2
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11) 29 3.2
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 28 4.2
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026) 28 4.2
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 28 5.5
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 7.3
SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3) 27 7.3
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 138 bits (335), Expect = 2e-33
Identities = 61/82 (74%), Positives = 72/82 (87%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
MTN+KGYRRGTR +F+++FR G LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482
Query: 189 TGRVYNVTAHALGVIVNKRVRG 254
TGRVYNVT ALGV+VNK+V+G
Sbjct: 483 TGRVYNVTKRALGVVVNKQVKG 504
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 30.7 bits (66), Expect = 0.78
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 320 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 469
F+KR + +R L+E A +NL ++PA P K + EKPV P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319
>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
Length = 305
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 383 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 475
VN + PP A + ++ ++PVL P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160
>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
Length = 271
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 266 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 382
+RI ++H ++ K +QDF+ +KE RL +E+++ T
Sbjct: 39 ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78
>SB_37902| Best HMM Match : RPH3A_effector (HMM E-Value=7.6e-10)
Length = 314
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = +3
Query: 165 PHKVYHGKTGRV------YNVTAHALGVIVNKRVRGGLYRSASI 278
P KV K GRV YN+T G++ ++RG +Y + S+
Sbjct: 204 PEKVLETKFGRVEYQYLEYNITTQLAGIVNGSKLRGEMYINESL 247
>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 23 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 23 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
G+ + G++R+ TWNYS + + S +W + R +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127
>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 23 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 23 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 145
G+ + G++R+ TWNYS + + S +W + R +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127
>SB_10084| Best HMM Match : Cadherin (HMM E-Value=2.4e-06)
Length = 106
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 210 TAHALGVIVNKRVRGGLYRSASISVLSMSSTPS 308
T H+ V+V RGGL++ +ISV +S PS
Sbjct: 72 TKHSFNVVVRATDRGGLFKEMTISV-HLSGCPS 103
>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.7 bits (61), Expect = 3.2
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Frame = +3
Query: 171 KVYHGKTGRVYNVT-AHALGVIVNKRVR-GGLYRSASISVLSMSSTPSADKTSLRESKRM 344
++ HG + +V AH + + R R GL + + + SSTPS++K S K
Sbjct: 1891 RIPHGHSDDAADVAVAHCIANVQGPRTRTSGLNAAGTCHLQRRSSTPSSNKDSFEYKKHK 1950
Query: 345 RGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNPSYLRLS 467
R R+ + P K + S ++ ++ RL+
Sbjct: 1951 EKSIRSSRITVASRKQDHFERPDKPLSISEDVNTTAFKRLN 1991
>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
Length = 403
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 206 RDCSCSRCDCQQACSRRIIPKRINIRVEHVKHSKCRQDFLKRVKENERL 352
RDC+CS+C +R+ R+ I + K ++ R+ + +R EN RL
Sbjct: 44 RDCTCSKCQLITE-RQRVTAARVAILRQQRKSAELREKY-QREMENVRL 90
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 266 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 445
K I + EH + S C Q F + N + ++ + GKT + + K HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/71 (21%), Positives = 35/71 (49%)
Frame = +2
Query: 266 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 445
+++ + K R + ++ + +RLL+++++ K L++ P P A + + E
Sbjct: 1536 RKLTVEQREPYRLKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPET 1593
Query: 446 PVLLAPIPYEF 478
P+ A P+ F
Sbjct: 1594 PIHQAASPFVF 1604
>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
Length = 528
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 182 WKDRSRVQRDCSCSRCDCQQACSR--RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLL 355
WK++ ++ + C Q+ + +P + + ++ ++ SKC Q+ L KEN RL+
Sbjct: 342 WKEQYIIRANWFSGHCHVQKLHQNEHKTLPHQ-SAKITCLRISKCSQNLLASAKENSRLV 400
>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
Length = 1139
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 146 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 241
C+S + D+S VQ+DCS R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 122 HC-RHQRQWCSSKGYATQSIPW--KDRSRVQRDCSCSRCDCQQACSRRIIPKRINI 280
HC RH ++ + AT+ +PW KD S R C + C C + R++I
Sbjct: 1275 HCQRHYQEKTRNWFLATRHVPWCRKDGSYDPRQCYKTDCFCVNEYGVYMSASRVDI 1330
>SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3)
Length = 218
Score = 27.5 bits (58), Expect = 7.3
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +2
Query: 77 NYSALHVHESVQSWRHCRHQRQWCSSKGYATQSIP--WKDRS-RVQRDCSCSRCDCQQAC 247
N A+ + ESV+SWR R++ + + + P DRS +V RCD Q
Sbjct: 85 NPDAMLLRESVRSWRE-NIPRKYSDLRPTSLKISPSCVPDRSEKVGISFMSGRCDMQYHG 143
Query: 248 SRRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKE 361
R +P+ + V + S+ R+ + V R L+E
Sbjct: 144 ISRPVPESV-FEVTRIHQSRRRKRRVNHVTRAWRRLRE 180
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 288 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 422
++S+ PS KT+ ++R RKP +PAR ST ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,655,531
Number of Sequences: 59808
Number of extensions: 357695
Number of successful extensions: 1175
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -