Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30206.Seq
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25576| Best HMM Match : WD40 (HMM E-Value=1.6e-30)                  32   0.26 
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_50647| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_45944| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_26590| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-17)                 27   9.6  

>SB_25576| Best HMM Match : WD40 (HMM E-Value=1.6e-30)
          Length = 326

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 471 VLEEL*WWNVSIEPVEDVAAVIPRGHRGSRPAPVLLTLSYSIYLKAWE 328
           V+E+L W   S  PV + AA +  G +   P P L++ S    +K W+
Sbjct: 175 VIEDLNWAPESATPVINEAAGVEGGKKAMSPGPFLVSASRDKSIKIWD 222


>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 294 YSTTTSITLVAAPTPSNKYYNSTSTKPVP 380
           Y++TTS T   + TP+  Y  +TS  P P
Sbjct: 68  YTSTTSYTPTTSYTPTTSYTPTTSYTPTP 96


>SB_50647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 243 LVDIVFLSTRNLLTPLNF--INLVLLQLNIMVGKLLTHSF 130
           LV IV L +R+L TP+NF  +NL +  + + +     H F
Sbjct: 26  LVVIVVLRSRSLRTPMNFLLVNLAIADMMVAIFMSPRHIF 65


>SB_45944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/58 (20%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -3

Query: 234 IVFLSTRNLLTPLNFINLVLLQLNIMVG-KLLTHSFTSYLMKVLISSINYYTPTLQNV 64
           I+ +    ++T +  + ++++ + +M+  K++T      +MK++++    Y PTL N+
Sbjct: 55  IMLMIMMMMMTMMKMMMMMMMMMMMMMKRKMMTTLLMMKIMKMMMAMSMMYEPTLYNI 112


>SB_26590| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-17)
          Length = 391

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 225 LSTRNLLTPLNFINLVLLQLNIMVGKLLTHSFTSYLMKV-LISSINYYTPTLQNVCMYT 52
           +S +N L+P   +   LL  + +VG +    F  YL+   L  S  +Y  T    C  T
Sbjct: 56  ISYKNTLSPPQVLLCALLFADCLVGVVFLPLFIGYLLSYELFKSCTFYAVTRAAGCFTT 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,393,415
Number of Sequences: 59808
Number of extensions: 268594
Number of successful extensions: 779
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)