Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30201.Seq
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7)                     92   4e-19
SB_6636| Best HMM Match : COX7C (HMM E-Value=1.8)                      29   2.6  
SB_38634| Best HMM Match : DUF164 (HMM E-Value=0.6)                    29   3.4  
SB_23665| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)                29   4.5  
SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25)                  29   4.5  
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7)
          Length = 176

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 43/57 (75%), Positives = 49/57 (85%)
 Frame = +1

Query: 61  MNVIQAVKMYITXMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
           MNVI AVK Y+T M   SG GMKV+LMDKETT IVSMVYSQ+E+LQKEVYLFER+D+
Sbjct: 1   MNVILAVKQYVTKMIEESGAGMKVLLMDKETTGIVSMVYSQTEVLQKEVYLFERVDT 57



 Score = 49.2 bits (112), Expect(2) = 1e-07
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +3

Query: 375 ADIKTLAECDEXEAVREVQEVFADYLAVDRHLFSFN 482
           A I+ LAE D+ E VREVQE +ADY A+  H+FS N
Sbjct: 77  ASIRALAEADDQEVVREVQEYYADYFAISPHVFSLN 112



 Score = 24.2 bits (50), Expect(2) = 1e-07
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 252 EHMKCIVFIRPTSENIALLS 311
           +H+K I F+RPT  +I  L+
Sbjct: 64  KHLKAICFLRPTPASIRALA 83


>SB_6636| Best HMM Match : COX7C (HMM E-Value=1.8)
          Length = 237

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 436 FLLTTWLWTDTCSLSILXDASKVGLEPTA 522
           F L  WLWT T SL+   D  +VG +  A
Sbjct: 15  FALYLWLWTSTASLTEAKDNLRVGCDTKA 43


>SB_38634| Best HMM Match : DUF164 (HMM E-Value=0.6)
          Length = 493

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -1

Query: 566 YRRSAXQTLRNSLEDAVGSNPTLEASXNIEREQVSVH---SQVVSKNFLDLSD 417
           Y       LR  LED V  N  LEA     R +V V+   S+ + K F  LSD
Sbjct: 131 YLADLVNDLRKDLEDEVDRNKDLEAQVRKVRSRVKVNTLGSKEMQKYFRQLSD 183


>SB_23665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -1

Query: 566 YRRSAXQTLRNSLEDAVGSNPTLEASXNIEREQVSVH---SQVVSKNFLDLSD 417
           Y       LR  LED V  N  LEA     R +V V+   S+ + K F  LSD
Sbjct: 131 YLADLVNDLRKDLEDEVDRNKDLEAQVRKVRSRVKVNTLGSKEMQKYFRQLSD 183


>SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)
          Length = 341

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 334 YLGSLSSRDNRAM---FSDVGRIKTMHFMCSCYPIWHDCLSSRISKLPSVRFPID 179
           YL SL  R + ++   + + GR+ T+      +P + D ++  IS++P V  P+D
Sbjct: 207 YLRSLRKRQDMSVNTTWPNFGRVTTLVAQDMTFPSYDDVINDVISRVPFVDPPLD 261


>SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25)
          Length = 455

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 458 HSQVVSKNFLDLSDSLXFITFGQSFDVCLRNYITEIYKVNTIFRISQFP 312
           + Q++     +LS+ + + T     D CL NY+ +I K N ++++  FP
Sbjct: 105 YDQLIVTGDFNLSE-IDWTTGAAKTDDCLTNYLCKIIKDNYLWQLIDFP 152


>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 436  FLLTTWLWTDTCSLSILXD-ASKVGLEPTASSNEFLKVCXALLLYSA 573
            FLL  + W    +  ++   ASK  L+ + S   F+K C A   + A
Sbjct: 900  FLLAAFAWMSVMAYDVMKTFASKAVLQASNSRKTFIKYCCAAFTFPA 946


>SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 164 TMLVVSLSINITFIPGPLXXXIXVMYIL--TACITFILIKLSLFIS 33
           T  + SLS ++TF+ GPL   +   Y +   A +  IL  L LF S
Sbjct: 57  TAWIASLSFSLTFMLGPLTTSLCTKYGVRSVAVLGAILFALGLFCS 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,344,177
Number of Sequences: 59808
Number of extensions: 376368
Number of successful extensions: 831
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)