Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0030
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)         31   0.54 
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      29   2.2  
SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)
          Length = 479

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +3

Query: 321 SIVFVTWRCPRNVLVETLIALMYFCILC*YRICCSTTYNIEF*IK*IRYLIINFM--IFC 494
           SI+ + + C    ++E  IAL+  CI+  Y  C ++ + +      +R+L+I  +  +FC
Sbjct: 254 SIISIFYSCS---IIEVGIALLGTCIVLKYHFCSTSIHKMP---PWVRFLVIECLGKVFC 307

Query: 495 NQIHLN 512
            Q H N
Sbjct: 308 RQEHTN 313


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 599 SYVILKRFVSYFKRLFTRVLLLHFKNCMFI*VYLIAENHKVNYEISYSFNLKL 441
           SY + KR +SYF+    R  + HF    F+  Y   E  ++  E S+ F+  L
Sbjct: 11  SYTLNKRVISYFREEHHRQRIGHFSEAFFVQEYSWNE-LQIQQEQSFQFHQNL 62


>SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1006

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 390 FCILC*YRIC---CSTTYNIEF*IK*IRYLIINFMIFCNQIHLNKHAIF 527
           FC+    R+C   CST   +    K IR LI+ ++ FC  + +   A+F
Sbjct: 694 FCVTLVIRLCALFCSTRRYVTLVSKLIRCLILQYVTFCVTLVMIGCAVF 742


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,772,600
Number of Sequences: 59808
Number of extensions: 282039
Number of successful extensions: 714
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)