Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0062.Seq
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            29   4.0  
SB_47040| Best HMM Match : PLAT (HMM E-Value=8.7e-12)                  28   6.9  
SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)            28   6.9  

>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 33  FQTCNAKCSSKFLNVIFFLLLYVVLGIFVWRTVL 134
           F  C A   +K + ++FF+LL +VLG+ +   VL
Sbjct: 423 FGCCGAWKENKCMLILFFILLLIVLGLEIAAAVL 456


>SB_47040| Best HMM Match : PLAT (HMM E-Value=8.7e-12)
          Length = 549

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 75  VIFFLLLYVVLGIFVWR 125
           ++ FLLLY V+ +F WR
Sbjct: 55  ILVFLLLYAVIAVFAWR 71


>SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)
          Length = 1523

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 75  VIFFLLLYVVLGIFVWR 125
           ++ FLLLY V+ +F WR
Sbjct: 115 ILVFLLLYAVIAVFAWR 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,771,659
Number of Sequences: 59808
Number of extensions: 332916
Number of successful extensions: 596
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)