Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F03f
         (408 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8160| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.1  
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)           28   3.4  
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_31028| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_8160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 122 SQDSRRGNESAR*SNVDNYFCYCNVPKITIYLIH 223
           + DSR+G ES    +  NY C   V   TI+LI+
Sbjct: 3   TSDSRQGKESDELQSPPNYLCVTAVKPATIHLIN 36


>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
          Length = 585

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 73  CLSTPSLGHYQSWLH 29
           CL+ P+LG Y +WLH
Sbjct: 91  CLANPALGWYVTWLH 105


>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1659

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 75  FRANTALYLVSVCKH--LVKTRE 137
           FR N  +YLV++C H  + KT+E
Sbjct: 645 FRTNKDMYLVAICVHGDMTKTKE 667


>SB_31028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 127 LTKCLHTLTKYKAVLARKCLSTPSLGHYQS 38
           +T  L T  K  AV A  C STP+  H QS
Sbjct: 137 VTVSLETKEKDLAVFADNCCSTPTRDHEQS 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,387,854
Number of Sequences: 59808
Number of extensions: 196385
Number of successful extensions: 316
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)