Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301E09f
(428 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8765| Best HMM Match : WD40 (HMM E-Value=3.9e-15) 29 2.2
SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37) 27 5.0
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 27 5.0
SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38) 27 5.0
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 27 5.0
SB_9368| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_51991| Best HMM Match : UPF0185 (HMM E-Value=3.3e-14) 27 5.0
SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05) 27 5.0
SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37) 27 5.0
SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 5.0
SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 5.0
SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05) 27 5.0
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05) 27 5.0
SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 27 8.7
SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1) 27 8.7
SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13) 27 8.7
>SB_8765| Best HMM Match : WD40 (HMM E-Value=3.9e-15)
Length = 481
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 167 KTQKINYRSTKMKMPSKLMWSMMLKLG 87
K +K N RS+++K P+K+ WS + G
Sbjct: 382 KNKKENIRSSQLKTPNKIFWSRIRCFG 408
>SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37)
Length = 493
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 400 SKECKTIQVVELTSQDDILIPPTQFTDTKDPKVYCITYIYLCN*SRVVIKVE 245
SKECK + VE++ +D F T++P +T N + ++V+
Sbjct: 80 SKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTITVNGKEIPMEVD 131
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 400 SKECKTIQVVELTSQDDILIPPTQFTDTKDPKVYCITYIYLCN*SRVVIKVE 245
SKECK + VE++ +D F T++P +T N + ++V+
Sbjct: 246 SKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTITVNGKEIPMEVD 297
>SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38)
Length = 856
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 400 SKECKTIQVVELTSQDDILIPPTQFTDTKDPKVYCITYIYLCN*SRVVIKVE 245
SKECK + VE++ +D F T++P +T N + ++V+
Sbjct: 389 SKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTITVNGKEIPMEVD 440
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 400 SKECKTIQVVELTSQDDILIPPTQFTDTKDPKVYCITYIYLCN*SRVVIKVE 245
SKECK + VE++ +D F T++P +T N + ++V+
Sbjct: 915 SKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTITVNGKEIPMEVD 966
>SB_9368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 400 SKECKTIQVVELTSQDDILIPPTQFTDTKDPKVYCITYIYLCN*SRVVIKVE 245
SKECK + VE++ +D F T++P +T N + ++V+
Sbjct: 461 SKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTITVNGKEIPMEVD 512
>SB_51991| Best HMM Match : UPF0185 (HMM E-Value=3.3e-14)
Length = 334
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 400 SKECKTIQVVELTSQDDILIPPTQFTDTKDPKVYCITYIYLCN*SRVVIKVE 245
SKECK + VE++ +D F T++P +T N + ++V+
Sbjct: 72 SKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTITVNGKEIPMEVD 123
>SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05)
Length = 403
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 400 SKECKTIQVVELTSQDDILIPPTQFTDTKDPKVYCITYIYLCN*SRVVIKVE 245
SKECK + VE++ +D F T++P +T N + ++V+
Sbjct: 246 SKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTITVNGKEIPMEVD 297
>SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37)
Length = 1122
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 400 SKECKTIQVVELTSQDDILIPPTQFTDTKDPKVYCITYIYLCN*SRVVIKVE 245
SKECK + VE++ +D F T++P +T N + ++V+
Sbjct: 262 SKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTITVNGKEIPMEVD 313
>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 400 SKECKTIQVVELTSQDDILIPPTQFTDTKDPKVYCITYIYLCN*SRVVIKVE 245
SKECK + VE++ +D F T++P +T N + ++V+
Sbjct: 585 SKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTITVNGKEIPMEVD 636
>SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 342
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 400 SKECKTIQVVELTSQDDILIPPTQFTDTKDPKVYCITYIYLCN*SRVVIKVE 245
SKECK + VE++ +D F T++P +T N + ++V+
Sbjct: 219 SKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTITVNGKEIPMEVD 270
>SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 369
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 400 SKECKTIQVVELTSQDDILIPPTQFTDTKDPKVYCITYIYLCN*SRVVIKVE 245
SKECK + VE++ +D F T++P +T N + ++V+
Sbjct: 246 SKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTITVNGKEIPMEVD 297
>SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05)
Length = 415
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 400 SKECKTIQVVELTSQDDILIPPTQFTDTKDPKVYCITYIYLCN*SRVVIKVE 245
SKECK + VE++ +D F T++P +T N + ++V+
Sbjct: 83 SKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTITVNGKEIPMEVD 134
>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
Length = 717
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 400 SKECKTIQVVELTSQDDILIPPTQFTDTKDPKVYCITYIYLCN*SRVVIKVE 245
SKECK + VE++ +D F T++P +T N + ++V+
Sbjct: 285 SKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTLTVNGKEIPMEVD 336
>SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 400 SKECKTIQVVELTSQDDILIPPTQFTDTKDPKVYCITYIYLCN*SRVVIKVE 245
SKECK + VE++ +D F T++P +T N + ++V+
Sbjct: 445 SKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTITVNGKEIPMEVD 496
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -2
Query: 304 VYCITYIYLCN*SRVVIKVELESMIISFLTTYLQIILF 191
V+ +T +++ S ++ + + S+II F+T + IILF
Sbjct: 1151 VFSVTILFITVFSVTILFITVFSVIILFITVFSVIILF 1188
>SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
Length = 1347
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 418 PFQSKDSKECKTIQVVELTSQDDILIPPT 332
PF +K + K +V+ L DD +IPPT
Sbjct: 85 PFSTKSIVQ-KVTEVINLEDSDDDIIPPT 112
>SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)
Length = 752
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 216 PPTYKLYCFVFMQEDEKNTKNKLSQHENENAKQID 112
PP + F + ++D+K + +HENE+ K D
Sbjct: 398 PPKSRFGKFKWARKDDKKDEGDSGEHENESEKAED 432
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,312,551
Number of Sequences: 59808
Number of extensions: 223963
Number of successful extensions: 565
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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