Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D07f
         (342 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_29698| Best HMM Match : DUF1610 (HMM E-Value=4.6)                   27   5.3  
SB_24575| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   7.0  
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_14030| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +3

Query: 228 RKKREVYDPNIDHHRVKRCCEYEKSRKRRSPAVXAPRQ 341
           RKKR + +P I     KR  E + SRKRRS     P Q
Sbjct: 496 RKKRSLVEPEIKQKN-KRSLESDISRKRRSLKEGPPSQ 532


>SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -2

Query: 233 LPVARIIVIVGLVDIFLFVPRFVDDLSDRDRHQQQPDYRTH 111
           L V  +  +VGL D    V  FV+   D   H  Q DY  H
Sbjct: 40  LKVGTLDTLVGLSDDLNKVDSFVESSVDLSNHAAQNDYNEH 80


>SB_29698| Best HMM Match : DUF1610 (HMM E-Value=4.6)
          Length = 739

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 26  FNSSYKCNYSEVRY*FAVFNCESALTAQDAFD 121
           F S Y+C   + R  ++ F+C SA T+    D
Sbjct: 532 FESDYRCLCEDCRKPYSTFDCGSAATSSRLHD 563


>SB_24575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 219  ASYRKKREVYDPNIDHHRVKRCCEYE 296
            AS+ ++R+  +PN+ HH    CCE E
Sbjct: 1106 ASFGEERQGENPNLKHH---ECCEEE 1128


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 245  HFSLLPVARIIVIVGLVDIFLFVPRFVDDLSDR 147
            HF L   A + V+V ++ + ++ P F+D +SDR
Sbjct: 1286 HFFLENPADVPVVVQVLPLSVYPPGFLDVISDR 1318


>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 181 KRKMSTSPTMTMMRATGRREKCMTPTSIIIESNVAVNMKSQE--NDARQLSXHQD 339
           +RK++T P   +++   +  K  T    + E N+A++  + E   + +Q+S  +D
Sbjct: 772 ERKLNTEPPKVVVKPLTKESKLQTSIRDLKEKNLALSRLNSELQQEVKQVSHARD 826


>SB_14030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 169 NRGTKRKMSTSPTMTMMRATGRRE-KCMTPTSIIIESNVAVNMKSQENDARQL 324
           N G+KR    SP+     A G+R    MTP  II ++N  V M    +  +Q+
Sbjct: 621 NPGSKRHAGLSPSELNFPAPGKRPFSSMTPV-IITDNNGNVKMVFGASGGKQI 672


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,269,082
Number of Sequences: 59808
Number of extensions: 94412
Number of successful extensions: 276
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)