Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0082
(526 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46847| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8) 29 3.1
SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 28 5.4
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 27 7.2
SB_58144| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0) 27 7.2
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0) 27 7.2
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0) 27 9.5
>SB_46847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 193 CDRTHEWQNFHLRSFLTDQHPSVTADHCWRTRNA 294
C H+W N +LT+Q S A H TR A
Sbjct: 42 CQLMHKWLNNQAPDYLTEQFTSFNAVHSRNTRYA 75
>SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)
Length = 234
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 193 CDRTHEWQNFHLRSFLTDQHPSVTADHCWRTRNA 294
C H+W N +LT+Q S A H TR A
Sbjct: 200 CQLMHKWLNNQAPDYLTEQFTSFNAVHSRNTRYA 233
>SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +3
Query: 201 HSRMAELPSAELPY*PTPLRDRGSLLE----NQERPGSSVHPRFWYSYIFS 341
HSRM E+P+ E P + L+ R LLE +Q +P + P+F +S++F+
Sbjct: 98 HSRMKEMPNIECPT-VSVLQSRWFLLEGRVRSQAKPLNPAPPQF-HSHVFT 146
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 134 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLT 247
+RIVGGS A GA P V+ + N CG +L+T
Sbjct: 629 SRIVGGSTAPPGAWP---WQVMLIYNSGRQFCGGTLVT 663
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 214 AIRECDHKSSKMGVSTSVGGRTTHNPGTVEVSGF 113
A R+CD +S S TTH G +++GF
Sbjct: 268 ANRDCDDSASSTSDKESAPDETTHASGNTKLTGF 301
>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 506
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2
Query: 131 GTRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLL 244
GTRIVGG+ A P A L A G + CG SL+
Sbjct: 257 GTRIVGGTEAPVNGWPWQAMLRSA---GGSQFCGGSLI 291
>SB_58144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 193 CDRTHEWQNFHLRSFLTDQHPSVTADHCWRTRNA 294
C H+W N +LT+Q S A H TR A
Sbjct: 13 CQLMHKWLNNQAPDYLTEQFNSFNAVHSRYTRYA 46
>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 718
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 134 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLL 244
+RIVGG A + P +++ N T CG SL+
Sbjct: 244 SRIVGGREAPRNSWPWQVEIILKTPNLTTHYCGGSLI 280
>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 530
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2
Query: 131 GTRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLL 244
GTRIVGG+ A P A L A G + CG SL+
Sbjct: 217 GTRIVGGTEAPVNGWPWQAMLRSA---GGSQFCGGSLI 251
>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 134 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNT 253
+R++GG A GA P IAL + ICG SL+++T
Sbjct: 475 SRVIGGKDAIPGAWPWQ----IALKSRGNFICGGSLVSST 510
>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
Length = 1019
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +2
Query: 134 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLL 244
+RIVGG+AAN G P A L T G CG SL+
Sbjct: 389 SRIVGGAAANPGDWPWQAQL--RTTTG-FPYCGGSLI 422
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,231,828
Number of Sequences: 59808
Number of extensions: 295965
Number of successful extensions: 1190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -