Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0066
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44132| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.49 
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  31   0.49 
SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)                28   6.0  
SB_59697| Best HMM Match : DUF1315 (HMM E-Value=4.5)                   28   6.0  

>SB_44132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 536 SILIIKHFHYSHYEQYFSQDKRRH 465
           SI+IIKH  Y H+  Y  Q  R+H
Sbjct: 21  SIIIIKHHGYHHHHHYHQQQYRKH 44


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -2

Query: 365  LVSDRLLSATCVTNDLSS*VPLKDTAAPRKPIAQLVKVEL-LPGRIYY---RQANCC*GK 198
            LVSDR    TC+ N+L   +P  +TA  R  I  + +  L LP  +      Q N   GK
Sbjct: 2327 LVSDRCFVVTCLVNELCKPIPATNTAGYRPKIFYMPRFALKLPVDMLQWTDLQGNNSVGK 2386

Query: 197  LRT 189
            +RT
Sbjct: 2387 IRT 2389


>SB_54793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 89  NFLTNDLIGKSLSIP--KSFLDTLVSCH 166
           N +TND +GKS+S P  K  L   VSCH
Sbjct: 421 NCMTNDTLGKSVSTPVIKDSLSRDVSCH 448


>SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)
          Length = 581

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 536 SILIIKHFHYSHYEQYFSQDKRRH 465
           +++I+KH H+ HY  +   D+R H
Sbjct: 222 TVIIVKHDHH-HYHHHLCHDRRHH 244


>SB_59697| Best HMM Match : DUF1315 (HMM E-Value=4.5)
          Length = 326

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 229 YILPGSSSTFTSCAIGFRGAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRN 408
           Y + G+ +   S   G  G A+     +  + L   + +N  + T QR+ L LQE K R 
Sbjct: 164 YTVLGAQANVRSSIAGAGGPAMEAQAEFT-KLLEDAIIENDIAQTVQRYQLALQEAKVRL 222

Query: 409 SQIV 420
           S  V
Sbjct: 223 SLAV 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,340
Number of Sequences: 59808
Number of extensions: 334097
Number of successful extensions: 982
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)