Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0065
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36244| Best HMM Match : 7tm_2 (HMM E-Value=1.2e-12)                 31   0.74 
SB_37935| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_34423| Best HMM Match : 7tm_2 (HMM E-Value=6e-07)                   31   0.74 
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)                     30   2.3  
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)                   28   6.9  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   9.1  

>SB_36244| Best HMM Match : 7tm_2 (HMM E-Value=1.2e-12)
          Length = 849

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -3

Query: 730 YGVDVIGMLFPKDTMPTSAFWKKAGHPSQYCRS--RGHQPGPNRRRICYQSRRDHDPCTV 557
           YG+ +I  + P DTM T    +K  +   YCR       P  + RR C +     DPC  
Sbjct: 13  YGISLICDVKPPDTMSTE---QKLDYLVTYCREGFAWEIPSESPRRYCLKLESCSDPCGK 69

Query: 556 PC 551
            C
Sbjct: 70  KC 71


>SB_37935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -3

Query: 730 YGVDVIGMLFPKDTMPTSAFWKKAGHPSQYCRS--RGHQPGPNRRRICYQSRRDHDPCTV 557
           YG+ +I  + P DTM T    +K  +   YCR       P  + RR C +     DPC  
Sbjct: 140 YGISLICDVKPPDTMSTE---QKLDYLVTYCREGFAWEIPSESPRRYCLKLESCSDPCGK 196

Query: 556 PC 551
            C
Sbjct: 197 KC 198


>SB_34423| Best HMM Match : 7tm_2 (HMM E-Value=6e-07)
          Length = 656

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -3

Query: 730 YGVDVIGMLFPKDTMPTSAFWKKAGHPSQYCRS--RGHQPGPNRRRICYQSRRDHDPCTV 557
           YG+ +I  + P DTM T    +K  +   YCR       P  + RR C +     DPC  
Sbjct: 586 YGISLICDVKPPDTMSTE---QKLDYLVTYCREGFAWEIPSESPRRYCLKLESCSDPCGK 642

Query: 556 PC 551
            C
Sbjct: 643 KC 644


>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 366

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 320 HPEFSEENYDKDVSIVRVTHAIHF 391
           HP +S ++YD D++++R+   + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 472 GNYRSRRQCI*RHLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDL 651
           G  +  R  +   LH+  + + + + CR+ +   D +VT N FCAG   +   D    D 
Sbjct: 253 GKRKLWRDRVANRLHEATVPIVDIQTCRKAHP--DYIVTANMFCAGFENSSRGDACQGDS 310

Query: 652 G 654
           G
Sbjct: 311 G 311


>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
          Length = 351

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 655 HPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 557
           +PS+ C +      P  +++ YQS+  HD C +
Sbjct: 171 NPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFI 203


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 532  VTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLG 654
            V N   C++ Y+     VT N  CAG  +   RD  N D G
Sbjct: 1321 VVNHNACKKAYENETWPVTSNMLCAG-YKNKSRDSCNRDSG 1360


>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 473

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 114 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 236
           +LV +E + P  N+W ++    +LT   Y STA    G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,417,803
Number of Sequences: 59808
Number of extensions: 605204
Number of successful extensions: 1511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)