Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0057
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_57667| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_8955| Best HMM Match : TPR_1 (HMM E-Value=0.00014)                  28   6.0  
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               28   8.0  
SB_18131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
 Frame = +3

Query: 375  RSQGGNVHSGTSVSEGWTRRVSPGRARPPTALIQ--GPSCWVVITQIYCDYTMLFFPK-- 542
            R  GG +  G    EGW  ++  GR+R P  +++   P  W + T +  +  +  F +  
Sbjct: 2802 RFLGGELSEGR---EGWETKLREGRSRAPEPIVELSEPFLWFLFTLLKTEEQVAAFNERG 2858

Query: 543  --EVILEQKFSANFIRILRDLKTTQP 614
              EV+     +++ + + +D++   P
Sbjct: 2859 GFEVLFSNLLASHTVELNQDVQELIP 2884


>SB_57667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 379 ERGPLLRVMLQHPDVGAATLTSRVQRVGSPDWEGNI 272
           E G ++++    P +G  TLT  + R  + DWEG++
Sbjct: 635 EEGEIIKLAKALPQMGNNTLTKDMLREYAGDWEGHL 670


>SB_8955| Best HMM Match : TPR_1 (HMM E-Value=0.00014)
          Length = 411

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +3

Query: 504 QIYCDYTMLFFPKEVILEQK--FSANFIRILRDLKTTQPHRSH 626
           Q+Y D T+LFF    + + K   S + I I+R L+  +P+ ++
Sbjct: 5   QLYVDDTLLFFSSSSVADIKLNLSVDLINIIRWLERNRPYLNY 47


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 607  HSRIARTSYEDRSRSSHRNF 666
            H R +R+SYEDRSR S  ++
Sbjct: 1425 HPRSSRSSYEDRSRDSRGSY 1444


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 321 SVAAPTSGCCSITRSRGPRSQG--GNVHSGTSVS 416
           SVAAPTS   S   S  PR QG  G + + T +S
Sbjct: 875 SVAAPTSAQYSAVTSSSPRGQGVAGAIQTSTPLS 908


>SB_18131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 607 HSRIARTSYEDRSRSSHRNF 666
           H R +R+SYEDRSR S  ++
Sbjct: 96  HPRSSRSSYEDRSRDSRGSY 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,555,307
Number of Sequences: 59808
Number of extensions: 498771
Number of successful extensions: 1341
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)