Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0054
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.018
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_56316| Best HMM Match : SMC_C (HMM E-Value=2.4)                     29   4.8  
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061)                  28   8.3  
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)                  28   8.3  

>SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +3

Query: 234 QWTVYLPFGVNDCWANRLHRCALNMLRGNQDAQVRYMQC--EYAPPFPSFIQGSYVCARE 407
           +W      G  +C  N +  CA+N+L+ N  A   ++ C  ++   +       Y CA++
Sbjct: 77  KWVFNCQHGQGECEGNIIEVCAINVLK-NISAYFPFIHCFEQFISSYNPSSTAQY-CAKQ 134

Query: 408 AGLDLVNLDHCVANV-GDELD 467
            G+D   ++ C + + G+EL+
Sbjct: 135 LGIDYAPIEKCASGLQGNELE 155


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 574  PESFVVAISINLIIKNDRRHEI 509
            P+ F++ ++++L + ND RHEI
Sbjct: 1286 PDDFIIKMNLSLRLSNDARHEI 1307


>SB_56316| Best HMM Match : SMC_C (HMM E-Value=2.4)
          Length = 1023

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 661 INIGDLNLTTSNIIVRVVK*SEANQTG---QPPESFVVAISINLIIKNDRRHEI 509
           I  G+ ++   NI+ R V  S  ++       P+ F V ++ +L + ND RHEI
Sbjct: 219 IQAGNDSVKDGNIVERAVYISSRDREACGVSRPDDFTVKMNPSLRLSNDARHEI 272


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 506 YNFVPSIVLNDEIDRNRHNEAFRRLPSLICFALLDDPNNDITSCQI 643
           ++F P +  +D++D+N  + +  +  S  C   +DDP  D+    I
Sbjct: 665 FSFKPDVNPDDDLDQNEASSSDCKSASDECKISVDDPGTDVPGSSI 710


>SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061)
          Length = 608

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 327 AQVRYMQCEYAPPFPSFIQGSYVCAR 404
           A VR   C YAPP  S ++ + VC R
Sbjct: 115 ADVRRCFCRYAPPHDSLLRLAVVCRR 140


>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
          Length = 1238

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +1

Query: 55   ACTYVEALQTVNGKIKISVGTTAGCSDTV-NFISQ--QLKEAYDLYKEYLEIEYVPWGRT 225
            A  Y EALQ +  K ++ +   A   + V NF+ Q  Q  E+Y++ KE LEIE    G  
Sbjct: 960  ALLYKEALQVLK-KDEVPLEDYAHKMEMVINFLIQAGQYSESYEMLKERLEIEEKQLG-A 1017

Query: 226  RFDNGQFTCHLESTTAGRI 282
            R ++     HL + T   I
Sbjct: 1018 RTEHLANIYHLMTKTKSEI 1036


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,841,367
Number of Sequences: 59808
Number of extensions: 463284
Number of successful extensions: 4180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4179
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)