Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0050
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 105 4e-23
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30) 28 7.9
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 105 bits (251), Expect = 4e-23
Identities = 50/85 (58%), Positives = 57/85 (67%)
Frame = +2
Query: 254 LILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFF 433
+ILANSS+D+ +HDTYYVVAHFHYVLS + TG N KI F+
Sbjct: 60 VILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFW 119
Query: 434 TIFIGVNITFFPQHFLGLAGIPRRY 508
+FIGVNITFFPQHFLGLAG PRRY
Sbjct: 120 IMFIGVNITFFPQHFLGLAGFPRRY 144
Score = 81.0 bits (191), Expect = 8e-16
Identities = 37/59 (62%), Positives = 49/59 (83%)
Frame = +3
Query: 78 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTG 254
+++DTRAYFT+AT+IIAVPTGIK+F LAT++G I + +L +GFVFLFT+GGLTG
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTG 59
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/40 (70%), Positives = 30/40 (75%)
Frame = +2
Query: 389 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRY 508
TG N KI F+ +FIGVNITFFPQHFLGLAG PRRY
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRY 58
>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 57 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 206
HH+ T+ I + T+I PT I + + +H T IN +P ++
Sbjct: 14 HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 376 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 498
+ FIY + FL +KN F+ YW+ YN F W T
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 473 HFLGLAGIPRRY 508
HFLGLAG PRRY
Sbjct: 1 HFLGLAGFPRRY 12
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 473 HFLGLAGIPRRY 508
HFLGLAG PRRY
Sbjct: 1 HFLGLAGFPRRY 12
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 473 HFLGLAGIPRRY 508
HFLGLAG PRRY
Sbjct: 1 HFLGLAGFPRRY 12
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 473 HFLGLAGIPRRY 508
HFLGLAG PRRY
Sbjct: 1 HFLGLAGFPRRY 12
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 473 HFLGLAGIPRRY 508
HFLGLAG PRRY
Sbjct: 1 HFLGLAGFPRRY 12
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 473 HFLGLAGIPRRY 508
HFLGLAG PRRY
Sbjct: 1 HFLGLAGFPRRY 12
>SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)
Length = 1084
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 200 YFMKIRFCIFIHSRRINRLILANSSIDITLHDTYYVVAHFHY 325
+F+K R IF ++ RL LA S+D + D + + H +Y
Sbjct: 545 HFVKKRNTIFERAKFNQRLQLAGESVDAFITDLHSLAEHCNY 586
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,412,022
Number of Sequences: 59808
Number of extensions: 175244
Number of successful extensions: 296
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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