Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30071
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   258   2e-69
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)             150   1e-36
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)                 112   2e-25
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 84   9e-17
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.030
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)                 33   0.16 
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.49 
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                  28   6.0  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     28   7.9  
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  258 bits (633), Expect = 2e-69
 Identities = 121/148 (81%), Positives = 127/148 (85%)
 Frame = +3

Query: 3    FNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYG 182
            FNI+DVTLH DAIHRGGGQIIPT RR LYAC+LTA+P L+EPVY  EIQCPE AVGGIYG
Sbjct: 677  FNIHDVTLHADAIHRGGGQIIPTARRVLYACMLTAKPCLLEPVYSVEIQCPESAVGGIYG 736

Query: 183  VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 362
            VLNRRRG V EES VAGTPMFIVKAYLPV ESFGFTADLRS TGGQAFPQCVFDHWQVLP
Sbjct: 737  VLNRRRGQVLEESNVAGTPMFIVKAYLPVMESFGFTADLRSKTGGQAFPQCVFDHWQVLP 796

Query: 363  GDPCEPQSKPYNVVQETRKRKGLKEGLP 446
            GD  +  S P  VV  TRKRKGLKEG+P
Sbjct: 797  GDVHDLASMPGQVVANTRKRKGLKEGIP 824


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score =  150 bits (363), Expect = 1e-36
 Identities = 65/125 (52%), Positives = 86/125 (68%)
 Frame = +3

Query: 3    FNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYG 182
            F I D  +  + IHRGGGQIIPT RR  Y+  L A PRLMEP +  E+Q P   V  +Y 
Sbjct: 657  FKILDAVIAGEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYFFVEVQAPADCVSSVYT 716

Query: 183  VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 362
            VL RRRGHV +++ V G+P++ +KA++P  +SFGF  DLR++T GQAF   VF HWQ++P
Sbjct: 717  VLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVP 776

Query: 363  GDPCE 377
            GDP +
Sbjct: 777  GDPLD 781


>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
          Length = 119

 Score =  112 bits (270), Expect = 2e-25
 Identities = 47/91 (51%), Positives = 65/91 (71%)
 Frame = +3

Query: 105 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 284
           A PRLMEP +  E+Q P   V  +Y VL RRRGHV +++ V G+P++ +KA++P  +SFG
Sbjct: 1   ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFG 60

Query: 285 FTADLRSNTGGQAFPQCVFDHWQVLPGDPCE 377
           F  DLR++T GQAF   VF HWQ++PGDP +
Sbjct: 61  FETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 91


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = +3

Query: 108 QP-RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 284
           QP RLM  +Y C IQ     +G +Y V+ RR G V  E    G+ +F V+A LPV ESFG
Sbjct: 407 QPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFG 466

Query: 285 FTADLRSNTGGQAFPQCVFDHWQVLPGDP 371
           F+ ++R  T G A PQ +F HW+ +  DP
Sbjct: 467 FSEEIRKRTSGLANPQLMFSHWEAIDLDP 495


>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = +1

Query: 265 LSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD*RKVS 444
           +S +   L P+ VPTPA R      S + RS  +TRAN+R SP       +RG    K S
Sbjct: 157 ISSTPQTLSPVSVPTPATR------SVLKRSPGKTRANIRGSPRYHDHSHQRGSPKTKTS 210


>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
          Length = 238

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +3

Query: 168 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 320
           G +   +NRR G V       G   F + A +P+N+ FG+  +LRS T G+
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 3   FNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 137
           FN   V L    + R   +I+PT RR  +  LLT+     +PVY+
Sbjct: 526 FNKLGVFLGLAEVRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570


>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 301 VPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD*RKVSQ 447
           +PT  ++ SRS+    G S   TR   R +     R R+RGK+   +S+
Sbjct: 440 LPTEKEKTSRSSSELSGDSQGSTRPRCRPAEPEGTRDRKRGKESESLSK 488


>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -3

Query: 349 QWSNTHCGKACPPVLE--RKSAVKPNDSL 269
           Q+   +CG ACPP  E   KS VK N  L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 211  SKSPRWQVHLCSL*RPTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSL 363
            +K P +   L SL  P  +  S S  L    P+P  +PS    S I +S++
Sbjct: 3074 NKPPEYSTVLASLSTPKEVHQSASEPLKRVSPSPGGKPSDKVSSVISQSTI 3124


>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 354 VLPGDPCEPQS-KPYNVVQETRK 419
           +LP  PCEP S KPY    E R+
Sbjct: 65  ILPASPCEPDSPKPYTPESEGRE 87


>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 106 AVSRHAYKHLLVVGMIWPPPLWMA 35
           A+ +H   HL  +  +WP   WMA
Sbjct: 13  ALRKHQCSHLFTIKRVWPVTRWMA 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,793,674
Number of Sequences: 59808
Number of extensions: 475471
Number of successful extensions: 1116
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)