Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30064
(604 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0) 187 5e-48
SB_25643| Best HMM Match : Toxin_22 (HMM E-Value=8.5) 49 3e-06
SB_46632| Best HMM Match : Toxin_22 (HMM E-Value=8.5) 49 3e-06
SB_2058| Best HMM Match : Lactamase_B (HMM E-Value=1.7e-16) 42 5e-04
SB_30226| Best HMM Match : Lactamase_B (HMM E-Value=8.4e-19) 37 0.014
SB_46101| Best HMM Match : Lactamase_B (HMM E-Value=0.11) 34 0.077
SB_11841| Best HMM Match : Ras (HMM E-Value=0) 32 0.31
SB_30227| Best HMM Match : Lactamase_B (HMM E-Value=1.1e-17) 30 1.7
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16) 29 3.8
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0) 29 3.8
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 28 6.7
SB_59256| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_49924| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8) 27 8.8
>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
Length = 543
Score = 187 bits (456), Expect = 5e-48
Identities = 86/154 (55%), Positives = 111/154 (72%)
Frame = +2
Query: 134 GKLKSLVPGTKSVIGKDSGAQADIHLLDGDLVRFGSHELLAAATPGHTNGCLTYICHEQS 313
G LK + +S+I K+SGA AD+ + DGD V FG L ATPGHTNGC+T++ H
Sbjct: 391 GLLKGMT-ACQSIISKNSGAIADVFVNDGDKVVFGDESLEVLATPGHTNGCITFVSHMHK 449
Query: 314 LAFTGDTLLIRGCGRTDFQEGNSETLYKSVHNRIFTLPDEYVLYPAHDYRGQTATSVAEE 493
+AFTGD LLIR CGRTDFQEG++E LY+SVH++I +LP ++ LYP HDY G ++T+V EE
Sbjct: 450 MAFTGDALLIRACGRTDFQEGSAEKLYESVHSKILSLPRDFTLYPGHDYTGMSSTTVDEE 509
Query: 494 KKYNPRLTKSLAEFVEIMDNLNLPYPKMINKAGA 595
K+NPRLTKS +FVEIM L L PK I ++ A
Sbjct: 510 LKHNPRLTKSKGDFVEIMSKLGLTKPKRIGRSSA 543
>SB_25643| Best HMM Match : Toxin_22 (HMM E-Value=8.5)
Length = 156
Score = 48.8 bits (111), Expect = 3e-06
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = +2
Query: 371 EGNSETLYKSVHNRIFTLPDEYVLYPAHDYR 463
EG++ LYKS+H++I +LP +Y+LYP HDY+
Sbjct: 125 EGDATVLYKSIHDQILSLPGDYLLYPGHDYK 155
>SB_46632| Best HMM Match : Toxin_22 (HMM E-Value=8.5)
Length = 197
Score = 48.8 bits (111), Expect = 3e-06
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = +2
Query: 371 EGNSETLYKSVHNRIFTLPDEYVLYPAHDYR 463
EG++ LYKS+H++I +LP +Y+LYP HDY+
Sbjct: 166 EGDATVLYKSIHDQILSLPGDYLLYPGHDYK 196
>SB_2058| Best HMM Match : Lactamase_B (HMM E-Value=1.7e-16)
Length = 338
Score = 41.5 bits (93), Expect = 5e-04
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Frame = +2
Query: 230 RFGSHELLAAATPGHTNG--C--LTYICHEQSLAFTGDTLLIRGCGRTDFQEGNSETLYK 397
+ GS + TP HT+G C +T + + FTGDTL GCGR F EG+ +Y
Sbjct: 214 KVGSLHVKCLFTPCHTSGHICFHVTGDAGKPTAVFTGDTLFSGGCGR--FFEGSPPEMYS 271
Query: 398 SVHNRIFTLPDEYVLYPAHDYRGQTATSVAEEKKYNP 508
++ + +LP E AH+ +++ EE +NP
Sbjct: 272 ALIEVLGSLP-ENTEKRAHN-EPTIPSTIGEEFSFNP 306
>SB_30226| Best HMM Match : Lactamase_B (HMM E-Value=8.4e-19)
Length = 318
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +2
Query: 209 LLDGDLVRFGSHELLAAATPGHTNGCLTYICHEQSLAFTGDTLLIRGCGRTDFQEGNSET 388
L DG+++ G +L PGHT G + L FTGD L+ D + T
Sbjct: 173 LTDGNIIDLGDKKLEVLHIPGHTPGSIALFEQTSGLLFTGDMLVKYKSRYLDLLPFSDVT 232
Query: 389 LY-KSVHNRIFTLPDEYVLYPAH 454
Y +S H + D + P H
Sbjct: 233 SYAQSCHKLLAISQDVTRVCPGH 255
>SB_46101| Best HMM Match : Lactamase_B (HMM E-Value=0.11)
Length = 157
Score = 34.3 bits (75), Expect = 0.077
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 191 AQADIHLLDGDLVRFGSHELLAAATPGHTNGCLTYICHEQSLAFTGDTL 337
AQ L DGD++ G+ +L PGH+ G + E F+GD +
Sbjct: 76 AQPTRVLEDGDIIDLGNRKLRVLHLPGHSRGSIALYEEESKTLFSGDII 124
>SB_11841| Best HMM Match : Ras (HMM E-Value=0)
Length = 523
Score = 32.3 bits (70), Expect = 0.31
Identities = 23/82 (28%), Positives = 30/82 (36%)
Frame = +2
Query: 209 LLDGDLVRFGSHELLAAATPGHTNGCLTYICHEQSLAFTGDTLLIRGCGRTDFQEGNSET 388
L DGDL G +L PGHT G + F+GD I G N
Sbjct: 147 LEDGDLFDLGDRQLRVIHLPGHTIGSIALYEENTKSLFSGDVAYI-GPLLDVLPTSNVTH 205
Query: 389 LYKSVHNRIFTLPDEYVLYPAH 454
++ H P+ +YP H
Sbjct: 206 YIQTAHKLRELAPNVDKVYPGH 227
>SB_30227| Best HMM Match : Lactamase_B (HMM E-Value=1.1e-17)
Length = 313
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 215 DGDLVRFGSHELLAAATPGHTNGCLTYICHEQSLAFTGDTL 337
DGD+ G+ ++ PGHT G + + +TGD +
Sbjct: 144 DGDVFDLGNRKIRVLHLPGHTKGSIALYEEDTKSLWTGDII 184
>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
Length = 736
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 289 DLHMSRTVIGVHW*HPLDPGLRP 357
DL M T GVH+ +PL P LRP
Sbjct: 222 DLKMKNTAQGVHFRYPLVPYLRP 244
>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
Length = 1498
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 131 LGKLKSLVPGTKSVIGKDSGAQADIHLLDGDLVRFGSHELLAAATPGHTNGCLTYI 298
+G + +PG + + DS D +LDG ++ ++L G +G L YI
Sbjct: 697 VGVAEMRLPGENNRLSSDSLTMEDEMVLDGAIISTSFDDVLETGIVGTASGTLWYI 752
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 342 SGVAAAPTSRRVTLRPSTNRSTIEYSLCPTSTCCIPRTITEGRLRHLSPKRRNTIPD 512
+G + P +V + TNR + + P T +TE L L P RR T D
Sbjct: 2698 AGRRSKPVLAKV-ISSHTNRDYVLVEVLPVLTIVNGSAVTEAELHQLHPSRRRTRRD 2753
>SB_59256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 273
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 295 VSQASISVARSRSSEEFVAPEPHQVTVEQVDIGLGSRI 182
V + + VA SRS +E + PEP + + + +G G+ I
Sbjct: 50 VKTSPMGVAVSRSPQELIIPEPCTLPLVKSYVGSGNEI 87
>SB_49924| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 295 VSQASISVARSRSSEEFVAPEPHQVTVEQVDIGLGSRI 182
V + + VA SRS +E + PEP + + + +G G+ I
Sbjct: 302 VKTSPMGVAVSRSPQELIIPEPCTLPLVKSYVGSGNEI 339
>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
Length = 245
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 549 SMIS-TNSASDFVNLGLYFFSSATDVAVCPR*SCAGYSTYSSGKVNI 412
S+IS T +++ + G Y SS T + VCP SC +SG I
Sbjct: 64 SIISCTYTSNSATSSGSYIISSTT-IGVCPTNSCTNLKDSTSGSSTI 109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,860,017
Number of Sequences: 59808
Number of extensions: 437433
Number of successful extensions: 1280
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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