Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30054
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      224   5e-59
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)                30   1.3  
SB_32694| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)                    28   5.4  
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_44356| Best HMM Match : Osteopontin (HMM E-Value=1)                 28   7.1  
SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)                27   9.4  
SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64)                   27   9.4  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  224 bits (547), Expect = 5e-59
 Identities = 109/174 (62%), Positives = 132/174 (75%)
 Frame = +3

Query: 102 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 281
           +D  K+P VPE++LK             +  L ++     K++EIFKRAE+YVKEYR KE
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 282 RDEIRPARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRL 461
            DE+R  + A+  GN+YVP EA+LAFVIRIRGIN VSPKVRK+LQL RLRQINNGVFVRL
Sbjct: 63  VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122

Query: 462 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
           NKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K+  QR+ +T NSIVEK L
Sbjct: 123 NKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVL 176


>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
          Length = 546

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 301 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSV 405
           P +HA    T  P + N H +S S  +T   RRSV
Sbjct: 318 PFRHATTTITVLPSRYNNHTASSSHATTTIQRRSV 352


>SB_32694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 220 RRRGKSSRGLNSTSRNTASRNVMKSDQPDKHAIVATTTFPG-KPNWHLSSESVV 378
           R  G S R ++ST   T S   M +  PD     AT   PG  P   L+SE+ +
Sbjct: 4   RSLGASGRRMSSTYTTTTSATGMPTVDPDLMLQSATDMLPGNNPRLSLTSETTL 57


>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -2

Query: 457 RTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMTNANLASPGT**LPRLRACLAGLISSRS 278
           RT  PLF    L  C   R    TW  P + +  + L       +      +A L+ +RS
Sbjct: 295 RTRAPLFYSFLLTGCTARRRENVTW-FPSMALAGSILLKQRCSDMNTTACIMAVLVKTRS 353

Query: 277 LMRYSLTY--CSALLKIS 230
           + ++ L +  CS+ ++IS
Sbjct: 354 MEQFLLLFIVCSSEIQIS 371


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 204 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRPARQARNRGNY 329
           R  AI ++RE+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


>SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)
          Length = 1466

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -1

Query: 428 QSKQLQNFTDLR*NLVDTTDSDDKCQFGFPGNVVVATIACLSGWSDFITFL 276
           ++ Q+    +L+  + +  D D K   G   N     I C+S W+ F+ FL
Sbjct: 330 KAAQVSTEVNLKEEIGENEDEDRKAHLGLWENPHRFHIICISLWTSFLVFL 380


>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = +1

Query: 214 PSRRRGKSSRGLNSTSRNTASRNVMKSDQPDKHAIVATTTFPGKPNWHLSSESVVSTKFH 393
           PSR RG  SRG+++T     SR++  +  P +   V TT  P +   + S  S  +TK  
Sbjct: 475 PSRSRGYPSRGISTTKH--PSRDIRTTGHPPRD--VRTTRRPSRSRGYPSRGS-HTTKHP 529

Query: 394 RRSVK 408
            R ++
Sbjct: 530 SRDIR 534


>SB_44356| Best HMM Match : Osteopontin (HMM E-Value=1)
          Length = 365

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +1

Query: 211 LPSRRRGKSSRGLNSTSRNTASRNVMKSDQPDKHAIVATTTFPGKPNWHLSSESVVST 384
           +P +R+G+  +  + ++    S    KS +PDK   V  ++   + N     E  ++T
Sbjct: 246 IPKKRKGRPQKKSSDSNTKKKSMEKTKSQEPDKPVCVLISSSDEENNQERFKEEKIAT 303


>SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 514 PQAM*GSAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFG 392
           P+ +  + +  +++V+L  R N  LF  RSL SC   RT+G
Sbjct: 428 PRVLCATLLPVVYSVSLDSRYNE-LFTGRSLQSCGNQRTWG 467


>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
          Length = 482

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +3

Query: 87  PVKGKEDSKKLP--AVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYV 260
           P K KE SK +   AV +S+LK             + T  ++  AI KKR  +    +Y+
Sbjct: 305 PAK-KESSKHIEKNAVKKSILKAPKRNAKKAATDAEQTTTKK--AIDKKRRRYNSRRRYI 361

Query: 261 KEYRIKERDEIRPARQARNR 320
           +  R   R      R  R R
Sbjct: 362 RRRRFTSRRRATRRRYTRRR 381


>SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64)
          Length = 325

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 183 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRPARQARNRG 323
           L+  L+ R   I+K       AE+ +K  R+KE D I    +  +RG
Sbjct: 219 LRQALRERDRLIEKINSAVMSAEEQLKVRRLKEDDSIDQLSRHEHRG 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,427,530
Number of Sequences: 59808
Number of extensions: 375116
Number of successful extensions: 995
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)