Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30013
(509 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 3e-18
SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 3e-11
SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 6e-11
SB_15646| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=8.3e-27) 58 3e-09
SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 7e-09
SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16) 57 1e-08
SB_47347| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=1e-17) 50 1e-06
SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14) 43 2e-04
SB_10343| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=0.00044) 42 3e-04
SB_55045| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_50052| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_12740| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_27283| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_23072| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05) 27 9.0
SB_17059| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-34) 27 9.0
>SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 88.6 bits (210), Expect = 3e-18
Identities = 44/114 (38%), Positives = 66/114 (57%)
Frame = +2
Query: 2 GCAGVSYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGEL 181
G G Y+ + ++ E+ V S + S+L + I G ++QK+KYLP++ +GE
Sbjct: 98 GGIGSGYMEHIIVLEEMSRVSGSIALSYGAHSNLCINQIARNGNKEQKRKYLPKLLSGEH 157
Query: 182 IGCFGLTEPNFGSDAGGLVTRAKHDAKNKCYVLSGSKTWITNAPIADIIIVWAK 343
IG ++E N GSD + RA D + YVL+G K WITN P AD++IV+AK
Sbjct: 158 IGALAMSEANAGSDVVSMKLRADKDGDH--YVLNGHKMWITNGPDADVLIVYAK 209
>SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 76.6 bits (180), Expect = 1e-14
Identities = 45/108 (41%), Positives = 64/108 (59%)
Frame = +2
Query: 17 SYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFG 196
++ L+ EL VD S VQ++L I YGT++QKQ+YLP++A ++G F
Sbjct: 102 TFFAANLVIEELAKVDPSVSVMCDVQNTLINNLIMTYGTKEQKQEYLPQLAQ-HMVGGFC 160
Query: 197 LTEPNFGSDAGGLVTRAKHDAKNKCYVLSGSKTWITNAPIADIIIVWA 340
L+E + GSDA L T A K+ +VL+GSK WITNA A + +V A
Sbjct: 161 LSEESSGSDAFALKTVALE--KDGHFVLNGSKMWITNAEYAGVFLVMA 206
>SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 75.8 bits (178), Expect = 2e-14
Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Frame = +2
Query: 2 GCAGVSYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGEL 181
G G+ + ++T EL S ++A+ +SLA + + G E+QK+KYL RM +
Sbjct: 175 GGIGLGVLDGCVVTEELSYACSGIQTAIEA-NSLAEMPVILAGNEEQKKKYLGRMIKEPI 233
Query: 182 IGCFGLTEPNFGSDAGGLVTRAKHDAKNKCYVLSGSKTWITNAPIADIIIVWAKDD---- 349
+ + +TEP GSD G+ TRA + K YV++G K WITN +A+ V A+ D
Sbjct: 234 MAAYCVTEPTAGSDVAGIKTRA--EKKGDEYVINGQKMWITNGGVANWYFVLARTDSSAS 291
Query: 350 AGK-VRGFIV 376
AGK GFIV
Sbjct: 292 AGKGFTGFIV 301
>SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 65.3 bits (152), Expect = 3e-11
Identities = 30/65 (46%), Positives = 43/65 (66%)
Frame = +2
Query: 113 SIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNFGSDAGGLVTRAKHDAKNKCYVLSGSK 292
S+ YGT+ QK++++ G+ +GCF L+EP+ GSDAG T A D + YVL+G+K
Sbjct: 124 SVNNYGTDAQKEEWIKPFLNGDRVGCFALSEPDNGSDAGAAKTTAVLDGDH--YVLNGTK 181
Query: 293 TWITN 307
WITN
Sbjct: 182 AWITN 186
>SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 64.1 bits (149), Expect = 6e-11
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Frame = +2
Query: 2 GCAGVSYVTYGLITRELDGVD-SSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGE 178
G G+ Y + EL + A+ VQ+ +A ++ +G+E+ KQ++L G+
Sbjct: 314 GGMGLDYSFSVAMAEELGSIKCGGVPMAIGVQADMATPALVRFGSEELKQQFLVPTIAGD 373
Query: 179 LIGCFGLTEPNFGSDAGGLVTRAKHDAKNKCYVLSGSKTWITNAPIADIIIVWAKDDAG 355
+ C G++E GSD + T A D + YV++G K W TN AD + + A D G
Sbjct: 374 FVTCLGVSETGAGSDVASIKTTAVKDGDD--YVINGGKMWTTNGIQADWMCLLANTDKG 430
>SB_15646| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=8.3e-27)
Length = 257
Score = 58.4 bits (135), Expect = 3e-09
Identities = 28/60 (46%), Positives = 37/60 (61%)
Frame = +2
Query: 179 LIGCFGLTEPNFGSDAGGLVTRAKHDAKNKCYVLSGSKTWITNAPIADIIIVWAKDDAGK 358
++GC G++E GSD GL T AK D + YV++GSK WITN+P AD I + A K
Sbjct: 1 MVGCIGVSEVGAGSDVAGLKTTAKKDGDD--YVINGSKMWITNSPSADFICLLANTSDDK 58
>SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 57.2 bits (132), Expect = 7e-09
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 6/101 (5%)
Frame = +2
Query: 59 VDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNFGSDAGGLV 238
VD++ + M+VQ +L G++ GTE K L + + + +GCFGLTE +G++A +
Sbjct: 150 VDAAMATKMTVQFNLFGGTVLKLGTERHHSKLLKGIDSLQEVGCFGLTELGYGNNAVQME 209
Query: 239 TRAKHDAKNKCYVLS-----GSKTWITN-APIADIIIVWAK 343
T A +D + K +V++ K WITN A A I+V+A+
Sbjct: 210 TTAVYDKETKEFVVNTPSPLAQKYWITNGACHAHHIVVFAQ 250
>SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16)
Length = 647
Score = 56.8 bits (131), Expect = 1e-08
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Frame = +2
Query: 59 VDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNFGSDAGGLV 238
VD S + M+VQ +L G++ GTE K L + + E +GCFGLTE +G++A +
Sbjct: 129 VDGSMATKMTVQFNLFGGTVLKLGTERHHSKLLKGIDSLEDVGCFGLTELGYGNNAVQME 188
Query: 239 TRAKHDAKNKCYVLS-----GSKTWITN-APIADIIIVWAK 343
T A +D + + ++++ K WITN A A I+V+A+
Sbjct: 189 TTATYDNETQEFIVNTPSTLAQKYWITNGACDAHHIVVFAQ 229
>SB_47347| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=1e-17)
Length = 551
Score = 49.6 bits (113), Expect = 1e-06
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Frame = +2
Query: 11 GVSYVTYGLITRELDGV-DSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIG 187
G++ V Y I E+ SS S + M + YG++ QK+K+L + G +
Sbjct: 282 GLTNVEYAFICEEMGRCFPSSEVFNCSPPDTGNMEVLIRYGSDAQKEKWLEPLLDGRIRS 341
Query: 188 CFGLTEPNF-GSDAGGLVTRAKHDAKNKCYVLSGSKTWITNAPIADIIIVWA 340
CF +TEP SDA + + + D + YVL+G K WI+ + + + WA
Sbjct: 342 CFAMTEPQVASSDAANIESSIRVDGDH--YVLNGRKWWISGVYLF-LALQWA 390
>SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 44.0 bits (99), Expect = 7e-05
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +2
Query: 107 MGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNF-GSDAGGLVTRAKHDAKNKCYVLS 283
M +++YG+ +QK+K+L + GE+ F +TEP SDA + + + YV++
Sbjct: 131 MEVLHLYGSPEQKKKWLDPLLNGEMRSAFCMTEPGVASSDATNMECKITRHGDH--YVIN 188
Query: 284 GSKTWITNA--PIADIIIV 334
G K W + A P I+IV
Sbjct: 189 GRKWWSSGAGDPRCKILIV 207
>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
Length = 490
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +2
Query: 107 MGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNFGSDAGGLVTRAKHDAKNKCYV--- 277
M +I + GT++Q++K+LP +++G F TE G+ GL T A +D + + +V
Sbjct: 143 MPTIKLMGTKEQQEKWLPLAEMHQILGTFAQTELGHGTFVRGLETTATYDKQTQQFVLHS 202
Query: 278 --LSGSKTWITN 307
L+ SK W N
Sbjct: 203 PSLTASKWWPGN 214
>SB_10343| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=0.00044)
Length = 156
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +2
Query: 53 DGVDSSYRSAMSVQSSLAMGS---IYMYGTEDQKQKYLPRMATGELIGCFGLTEPNF-GS 220
DG + S R + S G+ +++YG+ +QK+K+L + G++ F +TEP S
Sbjct: 70 DGEEPSIRQFQMLDVSSDSGNMEVLHLYGSPEQKKKWLDPLLNGDIRSAFCMTEPGVASS 129
Query: 221 DAGGLVTRAKHDAKNKCYVLSGSKTW 298
DA + + + YV++G K W
Sbjct: 130 DATNMECKITRHGDH--YVINGRKWW 153
>SB_55045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 400 PFFTSARSHYKTAYFTCVVFC 338
P+ +SA+ HY T + T +FC
Sbjct: 65 PWLSSAQEHYSTTFATLAIFC 85
>SB_50052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +2
Query: 2 GCAGVSYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGEL 181
G G++ Y + + D + + S+ I ++G ++ATG+
Sbjct: 77 GGVGLTNTQYARMVEIVGAHDLAVGIVLGAHQSIGFKGILLFGN---------KVATGKK 127
Query: 182 IGCFGLTEPNFGSDA 226
F LTEP+ GSDA
Sbjct: 128 YAAFCLTEPSSGSDA 142
>SB_12740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 254 DAKNKCYVLSGSKTWITNAPIADIIIVWAKDDAGKVRGFIVRTSR 388
DA+ K YV+ GS + +T+ + D+I + D V R S+
Sbjct: 636 DARRKGYVVQGSASQLTSGHVIDVIYLNTHDGDNYVNNANCRPSK 680
>SB_27283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 390 VKKGLDTPKINGKFXLRAXXTGMILLDEVXIPEENLL 500
VK G PK G F + + G +LLD V +P +++L
Sbjct: 209 VKLGDIGPK--GSFLINSQENGYLLLDHVRVPRDHML 243
>SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 958
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 417 FWAYLNLSLPRLVRTIKPRTLPASSFAQTIIMSAIGALV 301
FW + R + KP L +F QT ++S I L+
Sbjct: 133 FWTQFTVLTERTFKQSKPEILSKLNFIQTFVLSIIVGLI 171
>SB_23072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 152 ISVSGLQFRTYKSNPLPNYSAHSSLIYKRSQRHLVLL 42
++ SGLQ + Y S+LI+KR Q LVL+
Sbjct: 107 VAESGLQLQFYMQFQFYTIKITSTLIFKRVQARLVLI 143
>SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05)
Length = 1130
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 336 QTIIMSAIGALVIQVFDPDKT*HLFFASCFALVTNPPASLPKLGS 202
++II++ I AL+I V+ LF F + T+PP +LP + S
Sbjct: 879 RSIILTGILALII-VYMFSIVGFLFLKDDFLIETDPPPALPSIAS 922
>SB_17059| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-34)
Length = 333
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 201 VNPKQPINSPVAMRGKYFCFWSSVPYI 121
VN Q +N+ + +R KY C W+ V +I
Sbjct: 240 VNCLQLLNTDLCIRHKYQCIWAWVSFI 266
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,455,412
Number of Sequences: 59808
Number of extensions: 319266
Number of successful extensions: 717
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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