Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30128
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 6e-18
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 2e-16
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 77 2e-14
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_47029| Best HMM Match : Ldl_recept_b (HMM E-Value=8.2e-28) 59 3e-09
SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39) 54 7e-08
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 47 1e-05
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 44 1e-04
SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05) 34 0.082
SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11) 34 0.082
SB_59093| Best HMM Match : Ldl_recept_b (HMM E-Value=8.1e-06) 34 0.11
SB_46709| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_51058| Best HMM Match : EGF (HMM E-Value=0.11) 30 1.8
SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11) 29 2.3
SB_40043| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29) 29 4.1
SB_22410| Best HMM Match : MobB (HMM E-Value=0.81) 28 5.4
SB_37336| Best HMM Match : Peptidase_S7 (HMM E-Value=2.7) 28 5.4
SB_41369| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 87.8 bits (208), Expect = 6e-18
Identities = 44/87 (50%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLT--IEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNR 174
DW ++ ++WTDS+ T IEV+N+D + RKVLF +N+ PR IAV P G +FWTDW
Sbjct: 243 DWCSKKLYWTDSEVETNRIEVSNMDGRFRKVLFW-ENLGQPRAIAVDPASGYMFWTDWG- 300
Query: 175 SNPKIEWANMDGTERSVLLGSPDVKLP 255
PKIE A MDGT+R+V++ S D+ P
Sbjct: 301 EEPKIERAGMDGTQRTVIV-SKDIFWP 326
Score = 78.2 bits (184), Expect = 5e-15
Identities = 36/79 (45%), Positives = 53/79 (67%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
DW ARN++WTD+ IEV+ L+ RK+L S +++ PR I V P +G ++WTDW +
Sbjct: 560 DWIARNLYWTDTGMDRIEVSRLNGTSRKILIS-EDLWEPRAIVVDPGKGHMYWTDWG-EH 617
Query: 181 PKIEWANMDGTERSVLLGS 237
PKIE A++DG R +L+ S
Sbjct: 618 PKIERADLDGGNRIILVNS 636
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/86 (37%), Positives = 55/86 (63%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
DW A+N++WTDS+K IEV+ LD + R+ L +++ PR + + P G ++W + + +
Sbjct: 822 DWIAKNLYWTDSRKHKIEVSRLDGQHRRTLL-YKDVWEPRSLTLDPVNGHLYWANGGQDS 880
Query: 181 PKIEWANMDGTERSVLLGSPDVKLPT 258
I+ ANMDG+ R+ ++ +VK PT
Sbjct: 881 -SIDRANMDGSNRTKVIS--NVKRPT 903
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +3
Query: 255 NSVAIDWSRDRVCFADAGLQVIKCIDLHSRQIETIAE-NCRYPFGLAINGDKLYWSDWRT 431
N + ID+S +++ +ADA L I+ +D+ + + N R+ FGL + G+ LYW+DW
Sbjct: 642 NGLTIDYSDNKIYWADAKLDKIEVMDVDGSNRRVVLDSNIRHVFGLTLLGNYLYWTDWER 701
Query: 432 LKIEIIDTITQARGQI 479
I+++ ++ + R ++
Sbjct: 702 RNIDMLISLQEERKEV 717
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +3
Query: 261 VAIDWSRDRVCFADAGLQVIKCIDLHSRQIETIAENCRYPFGLAINGDKLYWSDWRTLKI 440
+ ID+ + +AD+ +VI+C DLH R T+A+ + PF L D +YW+DW T I
Sbjct: 905 ITIDYKEGLLFWADSERKVIECADLHGRNRRTVAQATK-PFALTQYLDYIYWTDWETESI 963
Query: 441 E 443
E
Sbjct: 964 E 964
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/67 (34%), Positives = 38/67 (56%)
Frame = +1
Query: 13 RNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKIE 192
+ +FWTD+ + I V +L + + PR I + P++G +FWTD ++ PKI
Sbjct: 1086 QQMFWTDAVRNEINVFSLKKMAPLGVVASAKDEMPRSIVLFPEKGLMFWTDVGKNGPKIL 1145
Query: 193 WANMDGT 213
A+MDG+
Sbjct: 1146 RASMDGS 1152
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +1
Query: 19 IFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKIEWA 198
I+W+D I+ A++D K + + SV+ + NP GIAV ++WTD +IE +
Sbjct: 523 IYWSDDTLQVIKRAHIDGKGVETVASVE-VQNPEGIAVDWIARNLYWTDTGMD--RIEVS 579
Query: 199 NMDGTERSVLL 231
++GT R +L+
Sbjct: 580 RLNGTSRKILI 590
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANL-DTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRS 177
D+ +FWTD I+ A + ++ + SV + P G+AV K++WTD
Sbjct: 199 DYEQNYVFWTDVLLEKIKRARIFGNNTQEDVISV-GLKRPEGLAVDWCSKKLYWTDSEVE 257
Query: 178 NPKIEWANMDGTERSVL 228
+IE +NMDG R VL
Sbjct: 258 TNRIEVSNMDGRFRKVL 274
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Frame = +1
Query: 19 IFWTDSKKLTIEV--ANLDTKVRKVLFSVQNIS-NPRGIAVHPQRGKIFWTDWNRSNPKI 189
+FWTD K ++ A++D + + V NI +P G+AV R K++WTD ++ KI
Sbjct: 1132 MFWTDVGKNGPKILRASMDGSFPQPI--VSNIPRSPVGLAVDTDRDKLYWTD--TAHKKI 1187
Query: 190 EWANMDGTERSVLL 231
E++++ G +R+VL+
Sbjct: 1188 EFSDLQGAKRTVLV 1201
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
D+S I+W D+K IEV ++D R+V+ NI + G+ + ++WTDW R N
Sbjct: 647 DYSDNKIYWADAKLDKIEVMDVDGSNRRVVLD-SNIRHVFGLTL--LGNYLYWTDWERRN 703
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +1
Query: 16 NIFWTD-SKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKIE 192
+++WTD + IE A+LD R +L + +++ P G+ + KI+W D KIE
Sbjct: 608 HMYWTDWGEHPKIERADLDGGNRIILVN-SSVTWPNGLTIDYSDNKIYWAD--AKLDKIE 664
Query: 193 WANMDGTERSVLLGS 237
++DG+ R V+L S
Sbjct: 665 VMDVDGSNRRVVLDS 679
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 VAIDWSRDRVCFADAGLQVIKCIDLHSRQIETIAE-NCRYPFGLAINGDKLYWSDWR 428
+A+D RD++ + D + I+ DL + + + N P GLAI+GD +YW D R
Sbjct: 1168 LAVDTDRDKLYWTDTAHKKIEFSDLQGAKRTVLVDTNLLTPIGLAIHGDFVYWIDSR 1224
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 318 IKCIDLHSRQIETIAENCR-YPFGLAINGDKLYWSDWRTLKI 440
I D + ++ TI +PF +++ G+KLYW+DW T I
Sbjct: 375 IATTDFNGKEKRTIIRGTLPHPFAVSLYGNKLYWTDWTTKSI 416
Score = 34.7 bits (76), Expect = 0.062
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +1
Query: 19 IFWTD-SKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKIEW 195
+FWTD ++ IE A +D R V+ S ++I P G+ + +I+WTD + + I
Sbjct: 294 MFWTDWGEEPKIERAGMDGTQRTVIVS-KDIFWPNGLTIDHNDKRIYWTDAKQHH--IAT 350
Query: 196 ANMDGTERSVLL 231
+ +G E+ ++
Sbjct: 351 TDFNGKEKRTII 362
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Frame = +3
Query: 255 NSVAIDWS--RDRVCFADAGLQVIKCIDLHSRQIETIAE-NCRYPFGLAIN--GDKLYWS 419
+ +A+D+ + + ++D LQVIK + + +ET+A + P G+A++ LYW+
Sbjct: 510 HGIAVDFDPIEEYIYWSDDTLQVIKRAHIDGKGVETVASVEVQNPEGIAVDWIARNLYWT 569
Query: 420 DWRTLKIEI 446
D +IE+
Sbjct: 570 DTGMDRIEV 578
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTD 165
D ++WTD+ IE ++L R VL N+ P G+A+H ++W D
Sbjct: 1171 DTDRDKLYWTDTAHKKIEFSDLQGAKRTVLVDT-NLLTPIGLAIHGD--FVYWID 1222
Score = 31.1 bits (67), Expect = 0.77
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +3
Query: 264 AIDWSRD--RVCFADAGLQVIKCIDLHSRQIET-IAENCRYPFGLAIN--GDKLYWSDWR 428
A+D+S + R+ + D L+ I L+ E I + YP GLA++ LYW+D R
Sbjct: 775 ALDFSIEEKRIYWTDITLKSINRAYLNGSNPEKLIIVDLEYPDGLAVDWIAKNLYWTDSR 834
Query: 429 TLKIEI 446
KIE+
Sbjct: 835 KHKIEV 840
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 372 RYPFGLAINGD--KLYWSDWRTLKIEIID 452
R P GLA++ D KLYW+D KIE D
Sbjct: 1163 RSPVGLAVDTDRDKLYWTDTAHKKIEFSD 1191
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 83.0 bits (196), Expect = 2e-16
Identities = 40/79 (50%), Positives = 49/79 (62%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
+W R I+WTD I+VA LD R VL S + PRGIAVHPQ G +FWTDW N
Sbjct: 1089 EWRTRRIYWTDRTYRFIQVATLDGSRRHVLIS-SGLDKPRGIAVHPQAGLMFWTDWG-EN 1146
Query: 181 PKIEWANMDGTERSVLLGS 237
PKIE A +DG +R ++ S
Sbjct: 1147 PKIERARLDGQKRQEIVTS 1165
Score = 77.8 bits (183), Expect = 7e-15
Identities = 35/77 (45%), Positives = 48/77 (62%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
DW R+++WTD+ IE A LDT ++ + + + PRG+ + P G +FWTDW S
Sbjct: 1422 DWLGRHLYWTDAGTKRIEAAQLDTGIQAPVI-MAGLDKPRGLVLDPPNGHMFWTDWG-SK 1479
Query: 181 PKIEWANMDGTERSVLL 231
PKIE +NMDGT R LL
Sbjct: 1480 PKIEKSNMDGTSRWTLL 1496
Score = 67.7 bits (158), Expect = 7e-12
Identities = 33/73 (45%), Positives = 45/73 (61%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
DW RN++WTDS K IEV+ LD RKVL ++ P + + P+ G +F++D S
Sbjct: 1687 DWIGRNLYWTDSGKGRIEVSRLDGTARKVLIQ-DDLERPTALVLFPEEGTMFFSDCG-SR 1744
Query: 181 PKIEWANMDGTER 219
PK+E A MDGT R
Sbjct: 1745 PKMEKAYMDGTSR 1757
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/78 (41%), Positives = 50/78 (64%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
D+ + N++WTD K+ IEVA+LD K R L + + P I + P G+++W D+ +N
Sbjct: 2009 DYISGNVYWTDPKRGRIEVASLDGKDRLTL-TGWSPDKPGAIVLDPVEGRMYWADYG-TN 2066
Query: 181 PKIEWANMDGTERSVLLG 234
PKI A+MDG+ R +L+G
Sbjct: 2067 PKIMTAHMDGSNRKILMG 2084
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +3
Query: 255 NSVAIDWSRDRVCFADAGLQVIKCIDLHSRQIETIAENC-RYPFGLAINGDKLYWSDWRT 431
N++ ID+ R+ +ADA L I+ D + + + E +PFG+A GDKLYW+D++T
Sbjct: 1504 NALTIDYQSKRLFWADAKLNRIEVCDWYGENRKPVFEKRGMHPFGMAFFGDKLYWTDYKT 1563
Query: 432 LKIE 443
++
Sbjct: 1564 KSVQ 1567
Score = 48.4 bits (110), Expect = 5e-06
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = +1
Query: 19 IFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKIEWA 198
IFWTD+ TI N+ T+ L N+ P GI V ++WTD + +IE +
Sbjct: 1650 IFWTDTFTGTINSYNMQTRKSMTLHRC-NVERPDGIGVDWIGRNLYWTDSGKG--RIEVS 1706
Query: 199 NMDGTERSVLLGSPDVKLPT---LWPSTG 276
+DGT R VL+ D++ PT L+P G
Sbjct: 1707 RLDGTARKVLI-QDDLERPTALVLFPEEG 1734
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 255 NSVAIDWSRDRVCFADAGLQVIKCIDLHSRQIETI-AENCRYPFGLAINGDKLYWSDW 425
NS+A+D++ +R+ + DA ++ DL R T+ + PFG++I G +YWSDW
Sbjct: 1171 NSIAVDYAANRLFWVDAIRDSLESSDLDGRARRTLFRQPGLQPFGVSILGKHVYWSDW 1228
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +1
Query: 13 RNIFWTDSKKLTIEVANLD-TKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKI 189
R I+W+D++ I+ A +D T + ++ + NI G+A+ + +I+WTD R+ I
Sbjct: 1050 RRIYWSDTRTKAIKRAQIDGTFIEDIITT--NIGVCDGLAIEWRTRRIYWTD--RTYRFI 1105
Query: 190 EWANMDGTERSVLLGS 237
+ A +DG+ R VL+ S
Sbjct: 1106 QVATLDGSRRHVLISS 1121
Score = 41.1 bits (92), Expect = 7e-04
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 19 IFWTD-SKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKIEW 195
+FWTD + IE A LD + R+ + + NI P IAV ++FW D R + +E
Sbjct: 1138 MFWTDWGENPKIERARLDGQKRQEIVT-SNIGWPNSIAVDYAANRLFWVDAIRDS--LES 1194
Query: 196 ANMDGTERSVLLGSPDVK 249
+++DG R L P ++
Sbjct: 1195 SDLDGRARRTLFRQPGLQ 1212
Score = 35.5 bits (78), Expect = 0.036
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDW 168
D+ ++ +FW D+K IEV + + RK +F + + +P G+A K++WTD+
Sbjct: 1509 DYQSKRLFWADAKLNRIEVCDWYGENRKPVFEKRGM-HPFGMAFFGD--KLYWTDY 1561
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +3
Query: 258 SVAIDWSRDRVCFADAGLQVIKCIDLHSR-QIETIAENCRYPFGLAIN--GDKLYWSDW 425
S+A+DW + + DAG + I+ L + Q I P GL ++ ++W+DW
Sbjct: 1418 SLALDWLGRHLYWTDAGTKRIEAAQLDTGIQAPVIMAGLDKPRGLVLDPPNGHMFWTDW 1476
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +3
Query: 252 SNSVAIDWSRDRVCFADAGLQVIKCIDLHS-RQIETIAENC-----RYPFGLAINGDKLY 413
+ +AID+ R+ + D G I+ + L+ +I N PFGLA + KLY
Sbjct: 2090 TTGLAIDFRFRRLYWCDMGTGKIESMSLNGGNRISVYDLNAGRKFRARPFGLAFSKGKLY 2149
Query: 414 WSD 422
W+D
Sbjct: 2150 WAD 2152
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
DW ARN++WTD I VA L+ RKVLFS N+ +PR I +HP RG +FW+D
Sbjct: 595 DWLARNLYWTDVDLHEISVAALNGSFRKVLFS-NNVKSPRAIVLHPHRGLMFWSDLGYP- 652
Query: 181 PKIEWANMDGTERSVLL 231
K+E + MDGT R VL+
Sbjct: 653 AKLESSYMDGTNRQVLV 669
Score = 73.7 bits (173), Expect = 1e-13
Identities = 35/90 (38%), Positives = 59/90 (65%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
DW RN++W+D + IEV+ L+ K R+VL S +++ +PRG+ + G +FWTDW S
Sbjct: 1331 DWIGRNLYWSDMRSDRIEVSTLEGKWRRVLLS-EDVESPRGLVLDSNAGYLFWTDWGTS- 1388
Query: 181 PKIEWANMDGTERSVLLGSPDVKLPTLWPS 270
P++E + +DG+ R V+ S +K+ +WP+
Sbjct: 1389 PRVERSWLDGSNRFVI--SFGIKI--VWPN 1414
Score = 69.3 bits (162), Expect = 2e-12
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
DW RN+++ +S I V+ LD +R L + ++S PRGIAV P+ G +FWTDW
Sbjct: 291 DWVGRNLYFVESSVRRIYVSKLDGSMRTSLITT-DLSKPRGIAVDPRVGYLFWTDWEAH- 348
Query: 181 PKIEWANMDGTERSVL 228
+IE ANMDG+ R +L
Sbjct: 349 -RIERANMDGSSRVIL 363
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/79 (40%), Positives = 45/79 (56%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
DW A+NI++ DS I VA D + R+ + S + P GIAV P G+IFWTD
Sbjct: 3549 DWVAKNIYFIDSTAHAIMVATADGRYRRTVVS-SGLEQPAGIAVDPISGRIFWTD-GGYR 3606
Query: 181 PKIEWANMDGTERSVLLGS 237
PK+ + +DGT+ L+ S
Sbjct: 3607 PKVMSSALDGTDPRSLVTS 3625
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
D+ ++W D+ K TIE A L+ K R+V++ + +P GI+++ +FW+DW R
Sbjct: 1672 DFETNRLYWCDASKNTIETAKLNGKNRRVIYQGNEVPHPFGISLY--EDSLFWSDWTRK- 1728
Query: 181 PKIEWANMDGT 213
+I +A GT
Sbjct: 1729 -QIVYAPKTGT 1738
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +3
Query: 255 NSVAIDWSRDRVCFADAGLQVIKCIDLHSRQIETIAENCRYPFGLAINGDKLYWSDWRTL 434
N +AID D + + DA I+ I L+ + ++PFGL + +YW+DW TL
Sbjct: 678 NGLAIDTETDLLYWTDAKTDTIEYIFLNGTGRRVLLSGLKHPFGLDVFAGYIYWTDWVTL 737
Query: 435 KI 440
I
Sbjct: 738 DI 739
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +1
Query: 19 IFWTD-SKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKIEW 195
++W K+ +I+ KV K + + +N+ P G+ + G+IFW D + IE
Sbjct: 1994 VYWAQWGKRPSIKSVWTSGKVIKTVLN-RNLQWPTGLTIDQAEGRIFWVDAKKD--IIES 2050
Query: 196 ANMDGTERSVLLGSPDVKLPTL 261
+ +DGT+R +++ +P + L ++
Sbjct: 2051 SLLDGTDRKIIVSAPGITLRSI 2072
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 255 NSVAIDWSRDRVCFADAGLQVIKCIDLHSRQIETIAENCR--YPFGLAINGDKLYWSDWR 428
N + ID+ +R+ + DA I+ L+ + I + +PFG+++ D L+WSDW
Sbjct: 1667 NGLTIDFETNRLYWCDASKNTIETAKLNGKNRRVIYQGNEVPHPFGISLYEDSLFWSDWT 1726
Query: 429 TLKI 440
+I
Sbjct: 1727 RKQI 1730
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +1
Query: 13 RNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNR 174
R +FW D+K+ +E AN D R+ L ++ + +P G+ V+ +++WTDW +
Sbjct: 2795 RKLFWVDAKRDVVEFANPDGTGRQQL-ALLHAPHPFGVTVY--EDEVYWTDWRQ 2845
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/85 (35%), Positives = 47/85 (55%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
D R I++TD + TI +D K ++V+ V+N+ N GIAV ++WTD +
Sbjct: 553 DARERKIYFTDVIRDTISRVGMDGKGQEVV--VRNLRNADGIAVDWLARNLYWTDVDLH- 609
Query: 181 PKIEWANMDGTERSVLLGSPDVKLP 255
+I A ++G+ R VL S +VK P
Sbjct: 610 -EISVAALNGSFRKVLF-SNNVKSP 632
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 19 IFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDW 168
++WTD+K TIE L+ R+VL S + +P G+ V G I+WTDW
Sbjct: 689 LYWTDAKTDTIEYIFLNGTGRRVLLS--GLKHPFGLDVF--AGYIYWTDW 734
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/62 (40%), Positives = 35/62 (56%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
D + IFW D+KK IE + LD RK++ S I+ R IAV + ++WTD + SN
Sbjct: 2032 DQAEGRIFWVDAKKDIIESSLLDGTDRKIIVSAPGIT-LRSIAVFGE--FLYWTDPSTSN 2088
Query: 181 PK 186
K
Sbjct: 2089 IK 2090
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +1
Query: 19 IFWTD-SKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKIEW 195
+FW+D +E + +D R+VL ++ P G+A+ + ++WTD IE+
Sbjct: 644 MFWSDLGYPAKLESSYMDGTNRQVLVKGGGLTWPNGLAIDTETDLLYWTD--AKTDTIEY 701
Query: 196 ANMDGTERSVLL 231
++GT R VLL
Sbjct: 702 IFLNGTGRRVLL 713
Score = 37.1 bits (82), Expect = 0.012
Identities = 26/85 (30%), Positives = 45/85 (52%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
DW + ++W+D K I + + R+ L + + G+AV ++W+D RS+
Sbjct: 1288 DWREKRLYWSDVYKKVISRSYFNGTGREDLIT-DALITAEGVAVDWIGRNLYWSDM-RSD 1345
Query: 181 PKIEWANMDGTERSVLLGSPDVKLP 255
+IE + ++G R VLL S DV+ P
Sbjct: 1346 -RIEVSTLEGKWRRVLL-SEDVESP 1368
Score = 35.9 bits (79), Expect = 0.027
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQR------------ 144
DW ARN++++D + I V+ L + K L + N+ PR + V P +
Sbjct: 2690 DWVARNLYFSDRVQDKIMVSTLTGRHMKTL--LDNLGEPRALVVDPSQGCQPSTYLQFNC 2747
Query: 145 ---GKIFWTDWNRSNPKIEWANMDGT 213
G +++TDW R P I +DG+
Sbjct: 2748 TPTGFLYYTDWGR-QPHIGRVGLDGS 2772
Score = 35.5 bits (78), Expect = 0.036
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +3
Query: 255 NSVAIDWSRDRVCFADAGLQ-VIKC-IDLHSRQIETI-AENCRYPFGLAINGDKLYWSDW 425
N + +D + RV + DA L ++ C D S++I + +PF + + D LYW+DW
Sbjct: 1414 NGLTLDLATKRVYWIDAKLDHIVSCEYDGSSKRIVLSGSRQINHPFAMTLFEDYLYWTDW 1473
Query: 426 R 428
+
Sbjct: 1474 Q 1474
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 252 SNSVAIDWSRDRVCFADAGLQVIKCIDLHS-RQIETIAENCRYPFGLAINGDKLYWSDW 425
+N++ +D++ V + +A L I + ++ E ++ +PFG+AI ++L++SDW
Sbjct: 371 ANTLTLDYTLQTVYWVEAHLDYIGAMSYDGLKRRELRGKSIIHPFGIAIYRNELFFSDW 429
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLD-TKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDW-NR 174
DW + ++W + TI + + + V+ VL S + +PR +A+ P ++W W R
Sbjct: 1945 DWIEKYLYWIEGNSQTIMRSTFNGSAVQTVLRS--GMDDPRSLALLPCEKLVYWAQWGKR 2002
Query: 175 SNPKIEWAN 201
+ K W +
Sbjct: 2003 PSIKSVWTS 2011
Score = 32.3 bits (70), Expect = 0.33
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 375 YPFGLAINGDKLYWSDWR 428
+PFG+ + D++YW+DWR
Sbjct: 2827 HPFGVTVYEDEVYWTDWR 2844
Score = 31.9 bits (69), Expect = 0.44
Identities = 15/64 (23%), Positives = 32/64 (50%)
Frame = +1
Query: 64 LDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKIEWANMDGTERSVLLGSPD 243
+D R+V+ + P G+ + + +++W D +++ IE A ++G R V+ +
Sbjct: 1649 MDGSSRRVIVHHMRMGYPNGLTIDFETNRLYWCDASKNT--IETAKLNGKNRRVIYQGNE 1706
Query: 244 VKLP 255
V P
Sbjct: 1707 VPHP 1710
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +3
Query: 261 VAIDWSRDRVCFADAGLQVIKCIDLH-SRQIETIAENCRYPFGLAING--DKLYWSDWRT 431
+A+DW + F ++ ++ I L S + I + P G+A++ L+W+DW
Sbjct: 288 LAVDWVGRNLYFVESSVRRIYVSKLDGSMRTSLITTDLSKPRGIAVDPRVGYLFWTDWEA 347
Query: 432 LKIE 443
+IE
Sbjct: 348 HRIE 351
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 252 SNSVAIDWSRDRVCFADAGLQVIKCIDLHSRQIETI-AENCRYPFGLAI--NGDKLYWSD 422
+ VA+DW + ++D I+ L + + +E+ P GL + N L+W+D
Sbjct: 1325 AEGVAVDWIGRNLYWSDMRSDRIEVSTLEGKWRRVLLSEDVESPRGLVLDSNAGYLFWTD 1384
Query: 423 WRT 431
W T
Sbjct: 1385 WGT 1387
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 115 PRGIAVHPQRGKIFWTDWNRSNPKIEWANMDGTERSVL 228
P G+ + K+FW D R +E+AN DGT R L
Sbjct: 2785 PNGLTMCRITRKLFWVDAKRD--VVEFANPDGTGRQQL 2820
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 524 PSECPGAANVCSQRNGNCNAGQLCLPNGSXGXSC 625
PS P N CS NC QLCL G +C
Sbjct: 463 PSRQPAMPNPCSP--SNCGCQQLCLVTVESGCTC 494
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 261 VAIDWSRDRVCFADAGLQVIKCIDLHSRQIETIAENCRYPF-GLAIN--GDKLYWSDWRT 431
+ DW R+ ++D +VI + E + + G+A++ G LYWSD R+
Sbjct: 1285 IDFDWREKRLYWSDVYKKVISRSYFNGTGREDLITDALITAEGVAVDWIGRNLYWSDMRS 1344
Query: 432 LKIEI 446
+IE+
Sbjct: 1345 DRIEV 1349
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANL 66
DW RN+FW D+ IEV+ L
Sbjct: 1891 DWVGRNLFWCDAITDLIEVSEL 1912
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 68.9 bits (161), Expect = 3e-12
Identities = 37/90 (41%), Positives = 49/90 (54%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
DW R ++WTD+ IEVANLD + R L + + PR I V+P G +FWTDW
Sbjct: 993 DWVNRKLYWTDTGTDVIEVANLDGRERMRLITT-GLQEPRAIVVYPAIGYMFWTDWG-EE 1050
Query: 181 PKIEWANMDGTERSVLLGSPDVKLPTLWPS 270
PKIE M+G ++ L V LWP+
Sbjct: 1051 PKIERCGMNGDPKTRL---QIVNTNILWPN 1077
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
D++ I+W D+K+ TIE ANLD R+V+ S ++ +P I V + I+WTDW + +
Sbjct: 1082 DYTIDKIWWADAKEHTIECANLDGTARRVITS-DSVHHPFAITVF--QDYIYWTDWVKES 1138
Query: 181 PKIEWAN-MDGTERSVL 228
I AN +G +RS++
Sbjct: 1139 --IYKANKFNGKDRSLV 1153
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 255 NSVAIDWSRDRVCFADAGLQVIKCIDLHSRQIETI-AENCRYPFGLAINGDKLYWSDW 425
N++ ID++ D++ +ADA I+C +L I +++ +PF + + D +YW+DW
Sbjct: 1077 NALTIDYTIDKIWWADAKEHTIECANLDGTARRVITSDSVHHPFAITVFQDYIYWTDW 1134
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
D++ I+W+D + +I+ A L+ ++ P GIAV K++WTD
Sbjct: 949 DFATGVIYWSDVIEASIKSAPLNNGSAVETIVNMSLLTPDGIAVDWVNRKLYWTD--TGT 1006
Query: 181 PKIEWANMDGTERSVLL--GSPDVKLPTLWPSTG 276
IE AN+DG ER L+ G + + ++P+ G
Sbjct: 1007 DVIEVANLDGRERMRLITTGLQEPRAIVVYPAIG 1040
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 255 NSVAIDWSRDRVCFADAGLQVIKCIDLHSRQ-IETIAENCRYPFGLAING--DKLYWSDW 425
+ +A+DW ++ + D G VI+ +L R+ + I + P + + ++W+DW
Sbjct: 988 DGIAVDWVNRKLYWTDTGTDVIEVANLDGRERMRLITTGLQEPRAIVVYPAIGYMFWTDW 1047
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +3
Query: 237 PRCEASNSVAIDWSRDRVCFADAGLQVIKCIDLHSRQ-IETIAE-NCRYPFGLAIN--GD 404
P+ A+ ++ D++ + ++D IK L++ +ETI + P G+A++
Sbjct: 938 PKLRAAIALDYDFATGVIYWSDVIEASIKSAPLNNGSAVETIVNMSLLTPDGIAVDWVNR 997
Query: 405 KLYWSDWRTLKIEI 446
KLYW+D T IE+
Sbjct: 998 KLYWTDTGTDVIEV 1011
>SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/77 (42%), Positives = 45/77 (58%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
DW+ ++WT+ K IEVA LD RK L N+ P+GI V P+ G +FWTD +
Sbjct: 155 DWATGLLYWTNRDKKAIEVAKLDGSFRKTLIK-DNLVGPKGIVVDPRTGLMFWTD--KET 211
Query: 181 PKIEWANMDGTERSVLL 231
PKIE A + G +R L+
Sbjct: 212 PKIERATLAGRDRISLV 228
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +3
Query: 270 DWSRDRVCFADAGLQVIKCIDLHSRQIETIAENCRYPFGLAINGDKLYWSDWRTLKIEII 449
D++ +R+ + D L I+ ID + +N +PF +AI G L WSD +E +
Sbjct: 241 DYASNRLYWCDPILDYIESIDYDGGNRRVLYKNGVHPFDMAIYGHMLIWSDLGINTVERV 300
Query: 450 DTIT 461
D T
Sbjct: 301 DMRT 304
>SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 842
Score = 61.7 bits (143), Expect = 5e-10
Identities = 31/77 (40%), Positives = 46/77 (59%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
D R I+WTD + IE A+ D R+ L + NPRGI + R +++WTDW +N
Sbjct: 707 DTVERRIYWTDIGRKRIERAHFDGSHREELERA-GLDNPRGIVLARARRQMYWTDWG-AN 764
Query: 181 PKIEWANMDGTERSVLL 231
P+IE A+MDG +R ++
Sbjct: 765 PRIERASMDGGQRKTIV 781
>SB_47029| Best HMM Match : Ldl_recept_b (HMM E-Value=8.2e-28)
Length = 300
Score = 59.3 bits (137), Expect = 3e-09
Identities = 32/79 (40%), Positives = 45/79 (56%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
DW A+NI++ DS I VA D + R+ + S + P GIAV P G+IFWTD S
Sbjct: 58 DWVAKNIYFIDSTAHAIMVATADGRYRRTVVS-SGLEQPAGIAVDPISGRIFWTDGGYS- 115
Query: 181 PKIEWANMDGTERSVLLGS 237
PK+ + +DG + L+ S
Sbjct: 116 PKVMSSALDGADPRSLVTS 134
>SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)
Length = 407
Score = 54.4 bits (125), Expect = 7e-08
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
DW R +FWTD TI V LD R+ L PR + V P K++WT+W + +
Sbjct: 144 DWKGRRLFWTDPGLGTISVIGLDGTGRRALIGTS--GKPRAVLVDPLDDKLYWTEWGQ-D 200
Query: 181 PKIEWANM-DGTERSVLLGS 237
+I A + DG+ + VL+ +
Sbjct: 201 ARITRARLSDGSGKEVLVST 220
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +3
Query: 255 NSVAIDWSRDRVCFADAGLQVIKCIDLHSRQIETIAENCR--YPFGLAINGDKLYWSDWR 428
N +A+D+ ++ +ADA +++ DL T+ ++ + +P+ L + D+LYW+DW+
Sbjct: 226 NGLAMDYVDKKIYWADASTDMVEKCDLDGENRLTLIDHTKVYHPYSLTLFRDRLYWTDWQ 285
Query: 429 TLKIEIIDTIT 461
IE D ++
Sbjct: 286 QHTIEHCDKLS 296
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNR 174
D+ + I+W D+ +E +LD + R L + +P + + R +++WTDW +
Sbjct: 231 DYVDKKIYWADASTDMVEKCDLDGENRLTLIDHTKVYHPYSLTLF--RDRLYWTDWQQ 286
Score = 34.7 bits (76), Expect = 0.062
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 VAIDWSRDRVCFADAGLQVIKCIDLHSRQIETIAENCRYPFGLAIN--GDKLYWSDW 425
+A+DW R+ + D GL I I L + P + ++ DKLYW++W
Sbjct: 141 LALDWKGRRLFWTDPGLGTISVIGLDGTGRRALIGTSGKPRAVLVDPLDDKLYWTEW 197
>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1937
Score = 52.0 bits (119), Expect = 4e-07
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +3
Query: 255 NSVAIDWSRDRVCFADAGLQVIKCIDLHSRQIETIAENCRYPFGLAINGDKLYWSDWRTL 434
N + + + + +CF DAG I+C+DL + + + YP+G+A L+W+DW
Sbjct: 1575 NGLTLVRANNELCFTDAGTWSIRCVDLGALNVRKVIYPIAYPYGIASFNRTLFWTDWMNN 1634
Query: 435 KIEII 449
K++ I
Sbjct: 1635 KVQRI 1639
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKI 153
DW RNI+WTD+ IEVA ++ R+VL S + +PR I V P G +
Sbjct: 1522 DWMGRNIYWTDTGLDVIEVAGMNGSNRRVLIS-NALDDPRAILVDPPNGDL 1571
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +1
Query: 19 IFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKIEWA 198
I+WT+ + I A D +V+ + + +P GIAV I+WTD IE A
Sbjct: 1484 IYWTEIMEGCIMRAKYDGTKLEVVIPRKQVKSPEGIAVDWMGRNIYWTDTGLD--VIEVA 1541
Query: 199 NMDGTERSVLLGS 237
M+G+ R VL+ +
Sbjct: 1542 GMNGSNRRVLISN 1554
Score = 31.5 bits (68), Expect = 0.58
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 25 WTDSKKLTIEVANLDT-KVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKIEWAN 201
+TD+ +I +L VRKV++ I+ P GIA + +FWTDW N K++
Sbjct: 1588 FTDAGTWSIRCVDLGALNVRKVIYP---IAYPYGIASFNRT--LFWTDW--MNNKVQRIG 1640
Query: 202 MDGTERSVLL 231
MD + V L
Sbjct: 1641 MDSKDPGVPL 1650
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/49 (46%), Positives = 27/49 (55%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRG 147
DWS R I+WTD ++ IEVA L R LFS + PR I V P G
Sbjct: 370 DWSGRKIYWTDGEQNMIEVAELTGAHRMTLFS-SGLDEPRAIVVDPSAG 417
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/79 (34%), Positives = 37/79 (46%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
D+ + IFWTD+K I A LD V V ++ P + V KI+WTD ++
Sbjct: 327 DYKSNLIFWTDAKAEKINRARLDGS-GSVEEIVGDVKVPDDVTVDWSGRKIYWTDGEQN- 384
Query: 181 PKIEWANMDGTERSVLLGS 237
IE A + G R L S
Sbjct: 385 -MIEVAELTGAHRMTLFSS 402
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSN 180
DW R ++W D TIEV+ LD L S + P + + P G ++W D
Sbjct: 790 DWVGRKMYWADPGANTIEVSELDGSNTMTLIS-SGLDKPSAVVLDPTEG-LYWID--SKL 845
Query: 181 PKIEWANMDGTERSVLLGS 237
I+ N++GTE V++ +
Sbjct: 846 DVIKHCNLNGTEVRVVINT 864
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHP 138
DW + N++W D+ IEV+ D + RKVLF N+ PR + + P
Sbjct: 19 DWLSNNLYWVDAGAKKIEVSRKDGRYRKVLFK-DNLDRPRALVLDP 63
>SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)
Length = 909
Score = 34.3 bits (75), Expect = 0.082
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRG 147
DW + +++TD I + D K K L + ++NP GIAV P G
Sbjct: 862 DWESSLLYFTDYFYEEIGIVTYDGKRNKTLITA-GVANPHGIAVDPSSG 909
>SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11)
Length = 534
Score = 34.3 bits (75), Expect = 0.082
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +1
Query: 1 DWSARNIFWTDSKKLTIEVANLD-TKVRKVLFSVQNISNP-----RGIAVHPQRGKIFWT 162
DW +++WTD IEV+NLD T +L++ N + IAV G +F+
Sbjct: 105 DWVNNHLYWTDETYEKIEVSNLDGTNRLMLLYNKYNGKDKEYAILESIAVDATEGYLFYI 164
Query: 163 DW 168
+W
Sbjct: 165 NW 166
Score = 33.5 bits (73), Expect = 0.14
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +1
Query: 19 IFWTDS-KKLTIEVANL-DTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKIE 192
+FW++ + I NL D V+ ++ ++I GIAV ++WTD + KIE
Sbjct: 67 LFWSELYPEFRIRRMNLTDGSVQTIVD--KDIGLVYGIAVDWVNNHLYWTD--ETYEKIE 122
Query: 193 WANMDGTERSVLL 231
+N+DGT R +LL
Sbjct: 123 VSNLDGTNRLMLL 135
>SB_59093| Best HMM Match : Ldl_recept_b (HMM E-Value=8.1e-06)
Length = 69
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 121 GIAVHPQRGKIFWTDWNRSNPKIEWANMDGTERSVLL 231
GIAV KI+WTD + KIE +N+DGT R + L
Sbjct: 7 GIAVDCVNDKIYWTD--ETYEKIEVSNLDGTNRRMQL 41
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 19 IFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAV 132
I+WTD IEV+NLD R++ +N + R AV
Sbjct: 17 IYWTDETYEKIEVSNLDGTNRRMQLYNKNDGSNRKYAV 54
>SB_46709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +3
Query: 333 LHSRQIETIAENCRYPFGLAINGDKLYWSDWRTLKIEIIDTITQARGQIDIPRSTIRL*V 512
+ +R ++ A+ Y G I G K + W L+I++IDT+ G + P L
Sbjct: 25 IQARSVDGFAKGYGYCAGDEIQGSK-FAHTWNILRIKLIDTVDLEGGPVGKPVVPAALMN 83
Query: 513 LPTR 524
PTR
Sbjct: 84 RPTR 87
>SB_51058| Best HMM Match : EGF (HMM E-Value=0.11)
Length = 148
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 375 YPFGLAINGDKLYWSDWRTLKIEII 449
YP+G+A L+W+DW K++ I
Sbjct: 45 YPYGIASFNRTLFWTDWMNNKVQRI 69
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +1
Query: 61 NLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKIEWANMDGTERSVLL 231
NL ++R + + I+ P GIA + +FWTDW N K++ MD + V L
Sbjct: 30 NLHFEIR--YYVIYPIAYPYGIASFNRT--LFWTDW--MNNKVQRIGMDSKDPGVPL 80
>SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)
Length = 335
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 306 GLQVIKCIDLHSRQIETIAENCR 374
GL + KC +L S I TIAENC+
Sbjct: 280 GLSLAKCRELTSTGIVTIAENCK 302
>SB_40043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 534
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -1
Query: 562 LRANVGSPGTLA-RRVGNTYNRIVDLGMSICPLAWVIVSMISIFNVLQSLQYNLSPLM 392
+ AN+ SP A R+ GN N ++ + +C W+I+ I +L SL++ L+ L+
Sbjct: 471 VEANL-SPSQFAYRKGGNCTNALISIQHQVCKYTWIIL----IAKLLGSLRWTLAKLL 523
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 527 SECPGAANVCSQRNGNCNAGQ-LCL 598
S+CPG+ C Q NC A Q LC+
Sbjct: 1637 SDCPGSQKCCRQHFANCLASQMLCI 1661
>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
Length = 420
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -3
Query: 296 EANSISRPVDGHRVGSFTSGLPRRTDL 216
+AN+ISRP+DG S SGLP T L
Sbjct: 86 KANNISRPLDGVFDMSSFSGLPMSTSL 112
>SB_22410| Best HMM Match : MobB (HMM E-Value=0.81)
Length = 234
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 515 QHL*PYRRSWNVYLPSRLGYCVYDFDFQ 432
+HL P R WN + L +CV + D+Q
Sbjct: 118 KHLTPTGRKWNRLMMCILNFCVTEMDYQ 145
>SB_37336| Best HMM Match : Peptidase_S7 (HMM E-Value=2.7)
Length = 481
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 606 PLGRHSCPALQLPFLCEQTLAAPGHSLGALATPI 505
PL R + AL+ E +APGH G L+ PI
Sbjct: 271 PLNRETFEALEPGGFIESDRSAPGHRRGRLSEPI 304
>SB_41369| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 43 LTIEVANLDTKVRKVL-FSVQNISNPR 120
LT+ VA L T RKVL + +NI+ PR
Sbjct: 626 LTVHVAELSTDTRKVLRLAKRNIAKPR 652
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 410 QFVSVDGEAEGVPAVLRNSLDL 345
QF+SV G AE VP +++ LDL
Sbjct: 1914 QFLSVQGAAECVPGMVKQILDL 1935
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,955,233
Number of Sequences: 59808
Number of extensions: 454007
Number of successful extensions: 1587
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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