Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30119
         (363 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       30   0.49 
SB_45933| Best HMM Match : RVT_1 (HMM E-Value=3.2e-13)                 27   6.0  

>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +2

Query: 104 ASGFMG*RYRPSCCTRCSSCFWSTPCSRRMVCAGTR*VEHNCXXTSR-RHRTPSWGG 271
           A GF G R    C +RC   ++ T CS    C  T    + C  TS   H  P W G
Sbjct: 437 APGFTGDR----CESRCPKGYYGTNCSNACTCKATN--TNVCDVTSGFCHCNPGWSG 487


>SB_45933| Best HMM Match : RVT_1 (HMM E-Value=3.2e-13)
          Length = 901

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 225 LCSTHL-VPAQTILLEQGVLQKQELQRVQQEGRYLQPMKPLAPVFHSSLHGQE 70
           L + HL  P+  + L    L++QEL+  +  GR  + + P+A  F    H  E
Sbjct: 558 LSAKHLGYPSSRLFLTGKTLRQQELEPARLMGRRCKTLLPVAGSFLQPQHSTE 610


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,112,410
Number of Sequences: 59808
Number of extensions: 119549
Number of successful extensions: 3389
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3387
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)