Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30114
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)              100   1e-21
SB_33138| Best HMM Match : Mov34 (HMM E-Value=0)                       31   0.93 
SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)             30   1.6  
SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21)          29   2.8  
SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07)                 29   2.8  
SB_22225| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score =  100 bits (240), Expect = 1e-21
 Identities = 47/68 (69%), Positives = 52/68 (76%)
 Frame = +1

Query: 511 DAKPKDLGLPTEAYQAVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXXHLLRDIKGTTV 690
           DAKPKDL LPT+AY AVEEVHDDGTPT++TFEH+PSEI           HLLRDIK  T 
Sbjct: 114 DAKPKDLRLPTDAYVAVEEVHDDGTPTTKTFEHIPSEIGAEEAEEVGVEHLLRDIKNLTA 173

Query: 691 GSLSQRIT 714
           G+LSQRIT
Sbjct: 174 GTLSQRIT 181



 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 37/44 (84%), Positives = 41/44 (93%)
 Frame = +2

Query: 266 RAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVN 397
           R KGVLDV+N FAVPFDEDD+D++VWFLDHDYLENMY MFKKVN
Sbjct: 45  RRKGVLDVANCFAVPFDEDDRDQNVWFLDHDYLENMYAMFKKVN 88



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +3

Query: 198 DHFNRMSKIGNQKRVVGVL 254
           DHFNRM K+G+QKRVVGVL
Sbjct: 23  DHFNRMGKVGSQKRVVGVL 41


>SB_33138| Best HMM Match : Mov34 (HMM E-Value=0)
          Length = 195

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 287 VSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGP 436
           V ++FA+P +  +   +     ++Y+       K V   E  +GWYH+ P
Sbjct: 89  VMDAFALPVEGTETRVNAQAAAYEYMAAYIESAKSVGRLENAIGWYHSHP 138


>SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)
          Length = 339

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/74 (20%), Positives = 36/74 (48%)
 Frame = +2

Query: 278 VLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQNDI 457
           ++D  +   VP +   +   + F  ++ ++  +  ++K +A     GW+H+G  LH  + 
Sbjct: 185 IIDSEHGNVVPINTPGE---ICFRGYNVMQGYWDDYEKTDAAIDSNGWFHSG--LHPGES 239

Query: 458 AINELIRRYCPNSV 499
           +  E I+ +C   +
Sbjct: 240 SSPEEIKEFCKGQI 253


>SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21)
          Length = 532

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 296 SFAVPFDEDDKDKSVW--FLDHDYLENMYGMFKKVNARE 406
           S++V F ED   K  W  +++ DYL+   G   KVN R+
Sbjct: 482 SYSVSFSED---KKTWQKYVERDYLQKAMGAITKVNQRK 517


>SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07)
          Length = 379

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 618 TWNMFKGPRSWCTIIVYFLYCLVSFSR*TKIFRFSIKITSTEFG 487
           T+ +  G R W  I    L  + +F   T   RF ++ITST+ G
Sbjct: 311 TYTLVSGGRGWVQIRGTALLAITTFDYETLPNRFDVRITSTDSG 354


>SB_22225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 140 HHESNHQSGGSSVSVAQCRGPF*PHE*NRESETSSRCSM 256
           HH+  ++ G   V++   RGP   H+   E  T+SR ++
Sbjct: 28  HHDWTYEGGHDIVTIGPTRGPRHHHDWTYEGSTTSRLNL 66


>SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = -2

Query: 118 FMIFT*VFSLKYSGFVAVLFYI 53
           F +F  +FS++YSGF+ V+F++
Sbjct: 294 FDLFKILFSIRYSGFLIVVFFM 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,268,674
Number of Sequences: 59808
Number of extensions: 405297
Number of successful extensions: 803
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)