Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30113
(770 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 5e-41
SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_27355| Best HMM Match : ABC_tran (HMM E-Value=1.1e-37) 37 0.021
SB_38838| Best HMM Match : ABC_tran (HMM E-Value=0.24) 36 0.036
SB_36627| Best HMM Match : ABC_tran (HMM E-Value=5.4e-06) 36 0.048
SB_30636| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0) 33 0.19
SB_6133| Best HMM Match : ABC_tran (HMM E-Value=9e-09) 33 0.19
SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44) 32 0.45
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 32 0.45
SB_37511| Best HMM Match : ABC_tran (HMM E-Value=0) 32 0.59
SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_14067| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_58724| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_12613| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_46572| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0) 31 1.4
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09) 31 1.4
SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41) 30 1.8
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4) 30 2.4
SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0) 30 2.4
SB_52472| Best HMM Match : ABC_tran (HMM E-Value=4.62428e-44) 30 2.4
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41) 29 3.1
SB_10268| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_58935| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_58705| Best HMM Match : ABC_tran (HMM E-Value=5.7e-05) 29 4.2
SB_26620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_24754| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36) 29 4.2
SB_53189| Best HMM Match : ABC_tran (HMM E-Value=0.021) 29 5.5
SB_37300| Best HMM Match : MMR_HSR1 (HMM E-Value=0.061) 29 5.5
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0) 28 7.3
SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21) 28 7.3
SB_13936| Best HMM Match : ABC_tran (HMM E-Value=4.6e-14) 28 7.3
SB_7019| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_59051| Best HMM Match : ABC_tran (HMM E-Value=2.4e-41) 28 7.3
>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 165 bits (400), Expect = 5e-41
Identities = 74/84 (88%), Positives = 77/84 (91%)
Frame = +2
Query: 257 CVKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTAL 436
C KKCPF+AITIIN+PSNLEK TTHRY NSFKLHRLPIPRPGEVLGLVG NGIGKSTAL
Sbjct: 69 CAKKCPFEAITIINLPSNLEKDTTHRYGPNSFKLHRLPIPRPGEVLGLVGTNGIGKSTAL 128
Query: 437 KILAGKQKPNLGRYTDPPDWQEIL 508
KILAGKQKPNLGR+ PPDWQEIL
Sbjct: 129 KILAGKQKPNLGRHDTPPDWQEIL 152
Score = 117 bits (281), Expect = 1e-26
Identities = 52/74 (70%), Positives = 58/74 (78%)
Frame = +3
Query: 54 MSRRKDHEETDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISE 233
M+ R D +KLTRIAIV+ D+CKPKRCRQECKKSCPVVRMGKLCIEVTP K+A ISE
Sbjct: 1 MAFRADQSTQEKLTRIAIVSTDKCKPKRCRQECKKSCPVVRMGKLCIEVTPETKLAAISE 60
Query: 234 ELCIGCGFV*RNVP 275
LCIGCG + P
Sbjct: 61 PLCIGCGICAKKCP 74
Score = 102 bits (245), Expect = 3e-22
Identities = 53/84 (63%), Positives = 62/84 (73%)
Frame = +1
Query: 511 HFRGSELQNYFTKILEDDLKALIKPQYVDQIPKAVKGTVGQLLDKKDEMKNQSVICRMLD 690
HFRGSELQNYFTKILEDDLKA+IKPQYVDQIPKAVK + G L ++V D
Sbjct: 154 HFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAVKVSEGMLYSISRVTTIRAVAG---D 210
Query: 691 LSHIRDREIAALSGGELQRFACAM 762
L+ + +R + LSGGELQRFACA+
Sbjct: 211 LTAVMERNVDELSGGELQRFACAV 234
Score = 33.9 bits (74), Expect = 0.15
Identities = 12/27 (44%), Positives = 22/27 (81%)
Frame = +2
Query: 386 EVLGLVGQNGIGKSTALKILAGKQKPN 466
E++ ++G+NG GK+T +++LAGK P+
Sbjct: 346 EIIVMLGENGTGKTTFIRMLAGKLSPD 372
>SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 958
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2
Query: 377 RPGEVLGLVGQNGIGKSTALKILAGKQKPNLG 472
RPGE+L L+G +G GK+T L +LAG+ + G
Sbjct: 33 RPGEMLALMGPSGSGKTTLLNVLAGRMAKDAG 64
>SB_27355| Best HMM Match : ABC_tran (HMM E-Value=1.1e-37)
Length = 226
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +2
Query: 386 EVLGLVGQNGIGKSTALKILAGKQKPNLG 472
E++GLVG+NG GK+T L+ L G+ P G
Sbjct: 2 EIIGLVGENGNGKTTLLRSLCGELNPTSG 30
>SB_38838| Best HMM Match : ABC_tran (HMM E-Value=0.24)
Length = 169
Score = 35.9 bits (79), Expect = 0.036
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Frame = +2
Query: 326 THRYSKNSFKLHRLPIPR--PGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYTDPPDWQ 499
T RY ++ L+ R PGE +GLVG +G GK+T +K++ N GR D Q
Sbjct: 72 TFRYGRHEAPLYDRFSARIAPGERVGLVGHSGSGKTTFIKLIQRLYDVNGGRIA--IDGQ 129
Query: 500 EILLI-SGALSCKITSQRSSKMI*RRSLSLNM 592
+I + +L +I + ++ R+L+ N+
Sbjct: 130 DIAQVRQASLRSQIAIVQQEPVLFHRTLAENI 161
>SB_36627| Best HMM Match : ABC_tran (HMM E-Value=5.4e-06)
Length = 240
Score = 35.5 bits (78), Expect = 0.048
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 311 LEKHTTHRYSKNSFKLHRLPIP-RPGEVLGLVGQNGIGKSTALKILAG 451
L+ H+Y S L L + GEV L+G+NG+GK+T LK L G
Sbjct: 84 LQVQQLHQYYGGSHILRGLSFDVKVGEVTCLLGRNGVGKTTLLKCLMG 131
>SB_30636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 380 PGEVLGLVGQNGIGKSTALKILAGKQKPNLG 472
PGEV+ L+G +G GKST L+ + ++PN G
Sbjct: 46 PGEVVCLIGPSGSGKSTLLRCVNLLEQPNEG 76
>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
Length = 1301
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +2
Query: 296 NIPSNLEKHTTHRY--SKNSFK-LHRLPIP-RPGEVLGLVGQNGIGKSTALKILAGKQKP 463
N+ ++ + H Y S+N K L+ L + R G+ + LVG++G GKST +K++ P
Sbjct: 647 NVTGDVTFNDIHFYYPSRNEVKVLNGLSLTVRSGQTVALVGESGCGKSTVIKLIQRFYDP 706
Query: 464 NLG 472
G
Sbjct: 707 ENG 709
>SB_6133| Best HMM Match : ABC_tran (HMM E-Value=9e-09)
Length = 562
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2
Query: 380 PGEVLGLVGQNGIGKSTALKIL 445
PGEV GL+G NG GK+T L ++
Sbjct: 318 PGEVFGLLGPNGAGKTTTLNMM 339
>SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 32.7 bits (71), Expect = 0.34
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 377 RPGEVLGLVGQNGIGKSTALKILAG 451
+ GE++G++G +G GKST + +LAG
Sbjct: 150 KSGELVGVLGPSGAGKSTLINVLAG 174
>SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)
Length = 945
Score = 32.3 bits (70), Expect = 0.45
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 383 GEVLGLVGQNGIGKSTALKILAGKQKPNLG 472
G+++ +G NG GK+T + IL G P G
Sbjct: 528 GQIMSFLGHNGAGKTTTMSILTGLFPPTAG 557
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 32.3 bits (70), Expect = 0.45
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 383 GEVLGLVGQNGIGKSTALKILAGKQKPNLG 472
G++ L+G NG GK+T + IL G P G
Sbjct: 227 GQITALLGHNGAGKTTTMSILTGLFTPTSG 256
>SB_37511| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 884
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 383 GEVLGLVGQNGIGKSTALKILAGKQKPNLG 472
G++ L+G NG GKST + L G +P+ G
Sbjct: 522 GQITALLGHNGAGKSTLIGALTGMIQPSSG 551
>SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 31.9 bits (69), Expect = 0.59
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 392 LGLVGQNGIGKSTALKILAGKQKPNLG 472
+ +VG NG GK+T LKIL G+ +P G
Sbjct: 367 IAVVGDNGSGKTTLLKILLGELEPVKG 393
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 383 GEVLGLVGQNGIGKSTALKILAGKQ 457
G GLVG+NGIGK+T L+ L+ ++
Sbjct: 232 GRRYGLVGRNGIGKTTLLRTLSKRE 256
>SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 380 PGEVLGLVGQNGIGKSTALKILAGKQKPNLG 472
PG+V+ LVG +G GKST + +L +P G
Sbjct: 379 PGQVVALVGPSGGGKSTCINLLEHLYEPTGG 409
>SB_14067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 392 LGLVGQNGIGKSTALKILAGKQKPNLG 472
+ LVG NG GKST LK++ G P G
Sbjct: 89 VALVGPNGAGKSTLLKLIEGLLSPTEG 115
>SB_58724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 377 RPGEVLGLVGQNGIGKSTALKILAGK 454
R GEV ++G +G GK+T L L+GK
Sbjct: 162 RAGEVTAIMGPSGAGKTTLLNTLSGK 187
>SB_12613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 651
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 377 RPGEVLGLVGQNGIGKSTALKILA 448
+PG +L ++G +G GKST + +LA
Sbjct: 218 KPGSLLAIMGASGAGKSTLMNVLA 241
>SB_46572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 51 EMSRRKDHE-ETDKLTRIAIVNADRCKPKRCRQECKKSCPVVRM 179
EM + K H E + RI +V+++ P+ CR EC ++ M
Sbjct: 372 EMQKEKSHLLEVPDVGRINLVSSNSSSPRSCRSECSTPAELLAM 415
>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1636
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 383 GEVLGLVGQNGIGKSTALKILAGKQKPNLG 472
G++ L+G NG GK+T + +L G P G
Sbjct: 335 GQITALLGHNGAGKTTLMSMLTGLFPPTSG 364
>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
Length = 944
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 CWQAEAQL-GSLH*PSRLARDTSHFRGSELQNYFTKILEDDLKALIKPQY 591
C+ +E Q+ GS H S + D+S SEL TK+L+ L+ P Y
Sbjct: 764 CYASEIQINGSSHSGSAASGDSSPSAASELATVVTKLLQSSLQPSSMPIY 813
>SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41)
Length = 336
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 380 PGEVLGLVGQNGIGKSTALKIL 445
PG+ L LVG +G GKST +++L
Sbjct: 167 PGQTLALVGNSGGGKSTIIRLL 188
>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1331
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -2
Query: 277 KGTFLHTKPQPIHSSSEMVAILSLGVTSMQSFPIRTTGQLFLHSCLHLFGLQRSAFTIA 101
+G+ H K P + +++ ++LG Q ++ F +CLH F QRSA +A
Sbjct: 1254 RGSLQHAKSDPGKLAETVLSDVALG----QKQGDASSASKFARNCLHFFAKQRSAIPVA 1308
>SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4)
Length = 235
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 260 VKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLH-RLPIPRPGEVLGLVGQNGIGKSTAL 436
V C ++++ + NL+ T + L L +P G ++ +VGQ G GKST L
Sbjct: 160 VPTCSLIDLSLVALSINLDVPTCSLIDLSLVALSINLDVPA-GSLVAVVGQVGCGKSTLL 218
Query: 437 KILAGK 454
L G+
Sbjct: 219 SALLGE 224
>SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 844
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 377 RPGEVLGLVGQNGIGKSTALKIL 445
R G+ + LVG++G GKST +K++
Sbjct: 143 RSGQTVALVGESGCGKSTLIKLV 165
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 383 GEVLGLVGQNGIGKSTALKILAGKQKPNLG 472
G+ L LVG +G GKST + +L P G
Sbjct: 695 GQTLALVGPSGCGKSTTVSLLERFYDPEDG 724
>SB_52472| Best HMM Match : ABC_tran (HMM E-Value=4.62428e-44)
Length = 322
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 377 RPGEVLGLVGQNGIGKSTALKILAGKQKPNLGRYTDPP 490
+PG L + G NG GKS+ +IL+G G PP
Sbjct: 91 QPGMHLLITGPNGCGKSSLFRILSGLWPVYKGYLAKPP 128
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 356 LHRLPIPRP-GEVLGLVGQNGIGKSTALKILAGKQKPNLG 472
LH + + P G ++ +VGQ G GKST L L G+ + G
Sbjct: 564 LHNINLNIPDGSLVAVVGQVGCGKSTLLSALLGETEKVTG 603
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 377 RPGEVLGLVGQNGIGKST 430
+PGE +G+VG+ G GKST
Sbjct: 1357 QPGEKIGIVGRTGAGKST 1374
>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 365 LPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGR 475
L IP G ++ +VGQ G GKST L L G+ + G+
Sbjct: 298 LNIPE-GSLVAVVGQVGCGKSTLLSALLGETEKTKGQ 333
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 377 RPGEVLGLVGQNGIGKST 430
+PGE +G+VG+ G GKS+
Sbjct: 926 QPGEKIGIVGRTGAGKSS 943
>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
Length = 1515
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 377 RPGEVLGLVGQNGIGKSTALKIL 445
RPGE +G+VG+ G GKS+ L
Sbjct: 1360 RPGERVGIVGKTGAGKSSVFAAL 1382
>SB_10268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 380 PGEVLGLVGQNGIGKSTALKILAGKQKPNLG 472
PGE + LVG +G GKST + ++ P G
Sbjct: 185 PGETVALVGPSGGGKSTVISLIERFYDPMTG 215
>SB_58935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 320 HTTHRYSKNSFKLHRLP-IPRPGEVLGLVGQNGIGKSTAL 436
+ T R+ N L L + RP V+G +G +GKST L
Sbjct: 36 YATERFITNDDALKELSKLSRPVRVIGAIGDARVGKSTTL 75
>SB_58705| Best HMM Match : ABC_tran (HMM E-Value=5.7e-05)
Length = 284
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 380 PGEVLGLVGQNGIGKSTALKILA 448
PG +L ++G +G GKST + +LA
Sbjct: 142 PGTLLAVMGASGAGKSTLMNVLA 164
>SB_26620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 377 RPGEVLGLVGQNGIGKSTALKILAGK 454
+ GEV ++G +G GK+T L L+GK
Sbjct: 339 KSGEVTAVMGPSGAGKTTFLNTLSGK 364
>SB_24754| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
Length = 781
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 377 RPGEVLGLVGQNGIGKSTALKILAGK 454
+ GEV ++G +G GK+T L L+GK
Sbjct: 221 KSGEVTAVMGPSGAGKTTFLNTLSGK 246
>SB_53189| Best HMM Match : ABC_tran (HMM E-Value=0.021)
Length = 127
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 383 GEVLGLVGQNGIGKSTALKILAGK 454
GEV ++G +G GK+T L L+GK
Sbjct: 17 GEVTAVMGPSGAGKTTFLNTLSGK 40
>SB_37300| Best HMM Match : MMR_HSR1 (HMM E-Value=0.061)
Length = 152
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 380 PGEVLGLVGQNGIGKSTALKILA 448
PGE++ ++G +G GK+T + +LA
Sbjct: 47 PGELVAVMGASGSGKTTLINVLA 69
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 9 ECRQYFASVRLLLTEMSRRKDHEETDKLTRIAIVNADRCKPKRCRQECKKS 161
E +YFA R+L+T R + H K+T + + P RCR EC S
Sbjct: 320 EKHRYFALKRVLVT--GRCECHGHAQKVT---FIKGNSSSPGRCRCECDPS 365
>SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 618
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 356 LHRLP-IPRPGEVLGLVGQNGIGKSTALKILAGKQKP 463
LH + + +P E +G+VG+ G GKS+ L L +P
Sbjct: 52 LHNVTCVIKPSEKVGVVGRTGAGKSSLLSTLFRLAEP 88
>SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)
Length = 1033
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 377 RPGEVLGLVGQNGIGKSTALKILAGKQKP 463
+P E +G+VG+ G GKS+ L L +P
Sbjct: 900 KPAEKVGIVGRTGAGKSSLLATLFRMAEP 928
>SB_13936| Best HMM Match : ABC_tran (HMM E-Value=4.6e-14)
Length = 441
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 383 GEVLGLVGQNGIGKSTALKILAGKQKP 463
G GL+G NG GKST L + ++ P
Sbjct: 81 GRKYGLIGLNGCGKSTMLTAIGKREIP 107
>SB_7019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 433 CSRLSYTVLANKT*NFSWSWDRQ 365
C RLS T A+ + N SW W R+
Sbjct: 280 CRRLSSTPFASASSNHSWGWQRK 302
>SB_59051| Best HMM Match : ABC_tran (HMM E-Value=2.4e-41)
Length = 474
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 383 GEVLGLVGQNGIGKSTALKIL 445
GE +G+VG+NG GKS+ + L
Sbjct: 93 GEKIGIVGRNGSGKSSVIHAL 113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,769,960
Number of Sequences: 59808
Number of extensions: 566636
Number of successful extensions: 1684
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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