Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30112
(527 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 3e-32
SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 31 0.59
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_58448| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 28 5.5
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09) 28 5.5
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36) 27 7.2
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 134 bits (325), Expect = 3e-32
Identities = 59/78 (75%), Positives = 73/78 (93%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IKGVGRRY+NIV KKADID++KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIKGVGRRYANIVCKKADIDMNKRAGELT 60
Query: 208 EEEVEKIITIMSNPRHIR 261
E+EVE+++TIM NPR +
Sbjct: 61 EDEVERVVTIMQNPRQYK 78
Score = 116 bits (278), Expect = 2e-26
Identities = 49/59 (83%), Positives = 55/59 (93%)
Frame = +3
Query: 255 YKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 431
YKIPDWFLNRQKD DGKYSQ+ ++ LD+K+REDLERLKKIRAHRG+RHYWGLRVRGQH
Sbjct: 77 YKIPDWFLNRQKDHKDGKYSQILANGLDNKMREDLERLKKIRAHRGLRHYWGLRVRGQH 135
>SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/34 (82%), Positives = 34/34 (100%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIK 129
MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IK
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIK 34
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 31.1 bits (67), Expect = 0.59
Identities = 25/89 (28%), Positives = 43/89 (48%)
Frame = +1
Query: 34 LVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEE 213
+ + D+F+H+ ++N ++ K+ + + +G+ ++I LK A + K T E
Sbjct: 1073 VTMADRFEHLDTLLNLSMIHKKHSVQVAKYLFDIGKMTADIGLKMAAAEGLKLPKAKTPE 1132
Query: 214 EVEKIITIMSNPRHIRYQTGS*IGKRILL 300
E KI M RHI IG+ ILL
Sbjct: 1133 EKRKIQYAMHIGRHIMR-----IGREILL 1156
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 258 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 386
K PD LN KD +GK T+ + ++L D ++ K R+H
Sbjct: 661 KHPDPSLNVNKDSEEGKTQAQTTDEIIAQLISDHKKKKNARSH 703
>SB_58448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +1
Query: 124 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRHIRYQ 267
++G+GR I + + ++ +++ EE+ ++ TI+ NP H +Q
Sbjct: 508 VRGMGRTKGYIDMLQEEMKREQQEVTMASEEMARVNTILCNPGHRGHQ 555
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 KIPDWFLNRQKDIVDGKYSQLTSSNLD-SKLREDLERLKKIRAHRGMR 398
K+ W L+ V+ KY + S + + + LRE+LE +KK+R G++
Sbjct: 2757 KLHQWLLD-----VENKYKEKASDSANVAVLREELEDIKKLRQDMGIQ 2799
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -1
Query: 218 TSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIAN 108
T +++HS + ++++ F+ + +E RPT L ++ N
Sbjct: 826 TDTALHSKGKDNKTLDLFVSSRVEKYRPTKLHEIVGN 862
>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
Length = 458
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 49 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 228
+F+H ++ + KRK + + +NI K DIDL G CTE+E+ ++
Sbjct: 59 EFRHEVQASTRKVSSKRKPIRKRRTVT------ANISATKYDIDL---LGYCTEQEIRRV 109
Query: 229 I 231
+
Sbjct: 110 V 110
>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
Length = 1290
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 276 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 371
L R+K + + KY + +N D K RE++E LK
Sbjct: 873 LRREKKVFE-KYQKAARANPDKKEREEIESLK 903
>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = +3
Query: 315 QLTSS--NLDSKLREDLERLKKI 377
QLTS N+D K+RE LE++KK+
Sbjct: 72 QLTSEEDNVDPKIREGLEKIKKL 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,019,684
Number of Sequences: 59808
Number of extensions: 307850
Number of successful extensions: 823
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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