Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30106
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_36083| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_55632| Best HMM Match : Vicilin_N (HMM E-Value=8.1)                 29   2.7  
SB_37127| Best HMM Match : DUF352 (HMM E-Value=3.3)                    28   8.2  

>SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 339  LFLEVTCISESCDANLADQSIRTVRSLIFC 250
            L  E+    E CD NL  Q+I T+R L+ C
Sbjct: 1175 LLSELAMALEGCDFNLQSQAIDTIRDLLAC 1204


>SB_36083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 155 LQKDSTGKGRDSPSPQYRQTPSLYHDSNI 69
           L +D+  + R S SP+  Q P  YH  NI
Sbjct: 380 LHRDTGNRSRRSSSPEQHQGPVFYHQENI 408


>SB_55632| Best HMM Match : Vicilin_N (HMM E-Value=8.1)
          Length = 148

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = -2

Query: 239 YQSIPTAYPRKLHFHSSKCTQNLNLCSTLQKDSTGKGRDSPSPQYRQTPSLYHDSNITIT 60
           Y+++ T      H  + +C Q      T  ++ST    +  + QYR   +   +S    T
Sbjct: 23  YRTVRTTVQNSTHNSTEQCAQQYRTVHTTVQNSTHNSTEQCAQQYRTVRTTVQNSAHNST 82

Query: 59  NKVPYVTMTV 30
            + P    TV
Sbjct: 83  EQYPQQHRTV 92


>SB_37127| Best HMM Match : DUF352 (HMM E-Value=3.3)
          Length = 256

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/62 (20%), Positives = 25/62 (40%)
 Frame = -2

Query: 239 YQSIPTAYPRKLHFHSSKCTQNLNLCSTLQKDSTGKGRDSPSPQYRQTPSLYHDSNITIT 60
           Y+++ T      H  + +C Q      T  ++ST    +  + QYR   +   +S    T
Sbjct: 188 YRTVHTTVQNSAHNSTEQCAQQYRTVRTTAQNSTHNSTEQSTQQYRTVRTTVQNSTHNST 247

Query: 59  NK 54
            +
Sbjct: 248 EQ 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,671,120
Number of Sequences: 59808
Number of extensions: 363843
Number of successful extensions: 949
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)