Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30091
         (322 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.6  
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.6  
SB_56| Best HMM Match : Actin (HMM E-Value=0)                          27   2.6  
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                       27   2.6  
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.9  
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.9  

>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GPSIVHRKCF
Sbjct: 367 GPSIVHRKCF 376


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GPSIVHRKCF
Sbjct: 366 GPSIVHRKCF 375


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GPSIVHRKCF
Sbjct: 366 GPSIVHRKCF 375


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GPSIVHRKCF
Sbjct: 367 GPSIVHRKCF 376


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GP+IVHRKCF
Sbjct: 329 GPAIVHRKCF 338


>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   GPSIVHRKCF 30
           GP+IVHRKCF
Sbjct: 340 GPAIVHRKCF 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,622,527
Number of Sequences: 59808
Number of extensions: 104232
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)