Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30075
(607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 35 0.044
SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0) 34 0.078
SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36) 33 0.24
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 32 0.41
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 32 0.41
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 31 0.55
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_15061| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 31 0.96
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0) 30 1.7
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_15403| Best HMM Match : CH (HMM E-Value=0) 29 2.2
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_18829| Best HMM Match : Filament_head (HMM E-Value=5.6) 29 3.9
SB_41025| Best HMM Match : APC_crr (HMM E-Value=6.7) 29 3.9
SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1) 29 3.9
SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_35205| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_2299| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_40417| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_35742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_12242| Best HMM Match : RGS (HMM E-Value=0.75) 28 6.7
SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_26019| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-29) 28 6.7
SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_46308| Best HMM Match : IMS (HMM E-Value=0) 27 8.9
SB_37261| Best HMM Match : rve (HMM E-Value=2.1e-08) 27 8.9
SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09) 27 8.9
SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 293 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSLGVC 472
+ R+G P +C G C A PVC D + ++ C L+ SCR++ V S G C
Sbjct: 5285 KARDGRPECVCDGICSLVYA-PVCGTDG----QEYSNECNLQIASCRKNELIEVASRGSC 5339
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 356 PVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSLGVC 472
PVC D +T+ CEL +C+ + V SL C
Sbjct: 5630 PVCGSDG----KTYNNECELRQYACKSDSLITVASLSSC 5664
>SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 325
Score = 34.3 bits (75), Expect = 0.078
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +2
Query: 296 VREGVPPPLCAGRCVAPPAGPVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSLGVC 472
VR G P +C C A PVC D +T+ C LE SC+ +T +V G C
Sbjct: 33 VRYGQPVCVCNEACTREYA-PVCGSDG----KTYPNPCALEVESCKTNTRISVIKKGSC 86
>SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36)
Length = 1173
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 481 NYSANSQTCDGVIRAFATRNSLEFT*SSECPSRSGCIKGAHWSCRRGHAPP 329
N + S + D + AF NS + +CP R C+ G H +C G++ P
Sbjct: 293 NLNDRSASSDAMTSAF---NSAVLPVAYQCPIRESCLGGLHGACSMGYSGP 340
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 31.9 bits (69), Expect = 0.41
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 287 RARVREGVPPPLCAGRCVAPPA-GPVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSL 463
R +V +G P +C P + PVC+ T TF T C +E +C ES V
Sbjct: 132 RCQVIKGKPQCVCRDVRECPSSMDPVCST----TGETFITKCHMEVEACTESRSMMVARR 187
Query: 464 GVC 472
G C
Sbjct: 188 GEC 190
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 323 CAGRCVAPPAGPVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSLGVC 472
C PA VC +D +T+ + C +EA CR + + LG C
Sbjct: 687 CPSESDCLPAAKVCGYDGK-VMKTYQSQCHMEAEGCRMAKDLQLIRLGSC 735
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 296 VREGVPPPLCAGRCVAPPA-GPVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSLGVC 472
V +G P +C P + PVC+ T TF T C +E +C ES V G C
Sbjct: 64 VIKGKPQCVCRDVRECPSSMDPVCST----TGETFITKCHMEVEACTESRSMMVARRGEC 119
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 323 CAGRCVAPPAGPVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSLGVC 472
C C + A PVC D RT+++ C ++A +C+ T AV G+C
Sbjct: 803 CNTECPSE-ASPVCGQDG----RTYSSTCAMDARACQAQTSIAVKHPGLC 847
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 31.5 bits (68), Expect = 0.55
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = +2
Query: 179 DCMDKSRLRQSTVHSNEIGERQRSQPPDMRAPGELVRARVREGVPPPLCAGRCVAPPAGP 358
D MD R R TV S + E + PP +P + A + PPPL AG PP P
Sbjct: 488 DSMDDQRDRAETVESLDFVEDRSPPPPPPASPPPPLPAE-EDNSPPPLPAG---PPPDEP 543
Query: 359 V 361
+
Sbjct: 544 M 544
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 293 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTRRTFATLCELEAVSC 430
+V++ P C RC+ P PVC D +T+ LCE+ SC
Sbjct: 4227 KVKDEKPVCECPSRCL-PDKEPVCGADG----KTYRNLCEIRKASC 4267
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 305 GVPPPLCAGRCVAPPAGPVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSLGVC 472
G P +C C + + PVC D +T+ CEL+ +C V S G C
Sbjct: 3964 GQPTCVCNKNCPST-SKPVCGSDG----KTYKNECELKRAACESKKNVTVASQGEC 4014
>SB_15061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = -2
Query: 438 LSRHETASSSHRVANVLRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALIS 259
LS+H S+ VA LRV A P GA+H P R++ +S L
Sbjct: 25 LSKHRRTSALASVAVTLRVTTTPAALNAPLQGASHSPFRLRNCWEGRSVRASSLLRQLAK 84
Query: 258 GG 253
GG
Sbjct: 85 GG 86
>SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 394 CPSRS--GCIKGAHWSCRRGHAPPCTQRRWHPLAD 296
C RS C +G+H SC +G P C Q +HP D
Sbjct: 87 CDQRSHPSCDQGSHPSCDQGSHPSCDQ-EYHPSCD 120
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 30.7 bits (66), Expect = 0.96
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 122 YLDSVGNVKRKGFCLYSF--SDCMDK-SRLRQSTVHSNEIGERQRSQPPDMRAPGELVRA 292
Y+ + +R+GFC SF D +DK + + N++ E +R+ P +++ +RA
Sbjct: 135 YITEHSSNRRRGFCFVSFDSEDTVDKICETQFHNIEGNKV-EVKRALPKEVQQQQAALRA 193
Query: 293 RVREGVPPPL 322
G+ P L
Sbjct: 194 AAGRGIIPAL 203
>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1568
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 293 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSLGVC 472
R ++G P +C C + PVC D T+ LC L +C ++T + G C
Sbjct: 588 RAQDGKPVCVCPPGCPSE-VKPVCGTDGV----TYDNLCSLRLKACTDNTRTRFKAFGEC 642
>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -3
Query: 407 IE*RMSFAFRLHQRRTLVLPAGPRTALHTAAVAP 306
+E + S L Q+ T + PA PR+AL TA V+P
Sbjct: 95 LELQQSSMALLQQQSTPIAPARPRSALQTAPVSP 128
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = -2
Query: 438 LSRHETASSSHRVANVLRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALIS 259
L++H S+ VA LRV A P GA+H P R++ +S L
Sbjct: 2356 LAQHRRTSALASVAVTLRVTTTPAALNAPLQGASHSPFRLRNCWEGRSVRASSLLRQLAK 2415
Query: 258 GG 253
GG
Sbjct: 2416 GG 2417
>SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 475 SANSQTCDGVI-RAFATRNSLEFT*SSECPSRSGCIKGAHWSCRR 344
S+ + C G++ R FA+ ++E S++C S G +CRR
Sbjct: 350 SSQKRACSGILSRPFASSETIEMENSNDCKQGSLSRAGGEVNCRR 394
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 302 EGVPPPLCAGRCVAPPAGPVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSLGVC 472
+G +C+ C A PVC D T+ LC L A C+ T+ G C
Sbjct: 717 DGKTKCVCSAACTREYA-PVCGSDG----NTYNNLCLLTAARCQSQTFIYRAHFGTC 768
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +2
Query: 335 CVAPPAGPVCAFDAAGTRR-TFATLCELEAVSCRESTYYAVTSLGVC 472
C P A P+ GT T+ LC L A SCR V G C
Sbjct: 1307 CPDPAACPLVKSRVCGTDGITYDNLCRLRAESCRRYQPVNVLHSGYC 1353
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +2
Query: 335 CVAPPAGPVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSLGVC 472
C+ P + A T+ + C LE SC+ Y + G C
Sbjct: 1861 CICPTCPKAKDYLCASNNLTYMSKCHLERASCQLGRYLTIKQKGKC 1906
>SB_18829| Best HMM Match : Filament_head (HMM E-Value=5.6)
Length = 153
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 170 SFSDCMDKSRLRQSTVHSNEIGERQRSQPPDMRAPGELVRARVREGV 310
SFS +R RQ+ H +G +S+ D+ PGE R G+
Sbjct: 45 SFSSLTSLARKRQNRTHDFSLGVAAKSEKVDLIFPGENKSIRGDHGI 91
>SB_41025| Best HMM Match : APC_crr (HMM E-Value=6.7)
Length = 274
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -2
Query: 435 SRHETASSSHRVANVLRVP--AASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALI 262
S + T+ H A R P + K+HT P S G+P R+ + TSS +L
Sbjct: 93 SPNVTSHKDHSSALSERSPNITSQKSHTSADSTPARSPPGSINGSPGRSGSMTSSVSSLS 152
Query: 261 SGG 253
S G
Sbjct: 153 SSG 155
>SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1)
Length = 556
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 308 PPRGPSLGPAHPGLSYPVADFFDAPQSRWN 219
P + P+L PA+P + + FF AP+ WN
Sbjct: 48 PLQIPTLPPANPSQYFSTSFFFWAPKRTWN 77
>SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 308 PPRGPSLGPAHPGLSYPVADFFDAPQSRWN 219
P + P+L PA+P + + FF AP+ WN
Sbjct: 265 PLQIPTLPPANPSQYFSTSFFFWAPKRTWN 294
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 356 PVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSLGVC 472
PVC D +T+ CE+ A +C +ST V G C
Sbjct: 1305 PVCGTDG----KTYGNKCEMRASACLKSTMVTVAYPGEC 1339
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 356 PVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSLGVC 472
PVCA + +T++ C+++A +C T V S G C
Sbjct: 1606 PVCASNG----KTYSNRCDMDADACIRDTKLTVVSQGAC 1640
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = +2
Query: 305 GVPPPLCAGRCVAPPAGPVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSLGVC 472
GVP C + VC D R T++ C L +C+ES V S G C
Sbjct: 1434 GVPRCECPMFKCSANRSDVCGSD----RMTYSNECTLTQTACQESKNLTVVSQGPC 1485
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -2
Query: 399 ANVLRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGG 253
AN + P HTGP T + + G T T TS PG SGG
Sbjct: 490 ANTIPTPVT---HTGPTARTTF--STNSGSTMGSTSVGTSGPGGSTSGG 533
>SB_35205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 301 ADPRSDQLTRGSHIRWLTSLTLPNLVGMN 215
A P+ + TRG R S+T+PN G+N
Sbjct: 104 ASPQPAKFTRGRRFRSSGSITIPNAPGLN 132
>SB_2299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = -1
Query: 277 TRGSHIRWLTSLTLPNLVGMNGRL-----AQSAFIHTVTKTIQTKTF 152
TRG H WL ++ +L G L A S +TVT+ +Q T+
Sbjct: 225 TRGGHYDWLLAVECRDLAGFEEALYKANAASSMLCNTVTELVQLSTW 271
>SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -1
Query: 394 CPSRSGCIKGAHWSCRRGHAPP-CTQ 320
CP S C+ G CR G+ P C+Q
Sbjct: 233 CPIESSCLGGLESRCREGYTGPLCSQ 258
>SB_40417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = -2
Query: 441 VLSRHETASSSHRVANVLRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALI 262
V +H S+ VA LRV A P GA+H P R++ +S L
Sbjct: 468 VYLQHRRTSALASVAVTLRVTTTPAALNAPLQGASHSPFRLRNCWEGRSVRASSLLRQLA 527
Query: 261 SGG 253
GG
Sbjct: 528 KGG 530
>SB_35742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1113
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 20/51 (39%)
Frame = -3
Query: 377 LHQRRTLVLPAGPRTALHTAAVAPPRGPSLGPAHPGLSYPVADFFDAPQSR 225
++QR T L P T V PP GP L A A AP SR
Sbjct: 913 VNQRATDPLATDPHATEGTDGVTPPAGPPLAAAQQTKDRVPATALRAPGSR 963
>SB_12242| Best HMM Match : RGS (HMM E-Value=0.75)
Length = 737
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = -2
Query: 441 VLSRHETASSSHRVANVLRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALI 262
V +H S+ VA LRV A P GA+H P R++ +S L
Sbjct: 109 VTIQHRRTSALASVAVTLRVTTTPAALNAPLQGASHSPFRLRNCWEGRSVRASSLLRQLA 168
Query: 261 SGG 253
GG
Sbjct: 169 KGG 171
>SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = -2
Query: 438 LSRHETASSSHRVANVLRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALIS 259
L H S+ VA LRV A P GA+H P R++ +S L
Sbjct: 585 LYEHRRTSALASVAVTLRVTTTPAALNAPLQGASHSPFRLRNCWEGRSVRASSLLRQLAK 644
Query: 258 GG 253
GG
Sbjct: 645 GG 646
>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -2
Query: 432 RHETASSSHRVANVLRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGG 253
+H S+ VA LRV A P GA+H P R++ +S L GG
Sbjct: 421 KHRRTSALASVAVTLRVTTTPAALNAPLQGASHSPFRLRNCWEGRSVRASSLLRQLAKGG 480
>SB_26019| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-29)
Length = 438
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -2
Query: 432 RHETASSSHRVANVLRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGG 253
+H S+ VA LRV A P GA+H P R++ +S L GG
Sbjct: 154 KHRRTSALASVAVTLRVTTTPAALNAPLQGASHSPFRLRNCWEGRSVRASSLLRQLAKGG 213
>SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 354 PAGGATHRPAHSGGGTPSRTLARTSSP 274
PAG R AH+ P+R AR +SP
Sbjct: 304 PAGNEASRTAHASRPAPTRETARETSP 330
>SB_46308| Best HMM Match : IMS (HMM E-Value=0)
Length = 1245
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/63 (28%), Positives = 24/63 (38%)
Frame = -2
Query: 441 VLSRHETASSSHRVANVLRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALI 262
+ H S+ VA LRV A P GA+H P R++ +S L
Sbjct: 369 LFKEHRRTSALASVAVTLRVTTTPAALNAPLQGASHSPFRLRNCWEGRSVRASSLLRQLA 428
Query: 261 SGG 253
GG
Sbjct: 429 KGG 431
>SB_37261| Best HMM Match : rve (HMM E-Value=2.1e-08)
Length = 757
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 316 AAVCRAVRGPAGRTSVRL*CSRNAKDIRYSM*TRGCFVSRKHVLRR 453
A V ++GP G+ V + + NAK R + RG R HVLRR
Sbjct: 585 AVVEELIQGPDGQHEVLVNANANAKRYRRKLIARGNEFPR-HVLRR 629
>SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09)
Length = 678
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -2
Query: 435 SRHETASSSHRVANVLRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISG 256
+R S + N+ + P A +A T P + + GG +T+A +SS G + SG
Sbjct: 75 ARRRPFSPKKSLGNLGKDPRA-RAQTLPDSESAPKEGAGGGPLTGKTIALSSSLGPVDSG 133
Query: 255 G 253
G
Sbjct: 134 G 134
>SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 341 APPAGPVCAFDAAGTRRTFATLCELEAVSCRESTYYAVTSLGVC 472
+P + +C D RT+++ C L SC Y++ +G C
Sbjct: 226 SPRSTEICGTDG----RTYSSFCALREHSCNVGRLYSIKHIGRC 265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,517,151
Number of Sequences: 59808
Number of extensions: 465195
Number of successful extensions: 1461
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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