Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H06
         (438 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   51   5e-07
SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)                      27   5.1  
SB_57167| Best HMM Match : Ribosomal_MRP8 (HMM E-Value=3)              27   8.9  
SB_48070| Best HMM Match : Metallophos (HMM E-Value=8.5)               27   8.9  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 22/31 (70%), Positives = 29/31 (93%)
 Frame = +2

Query: 296 IDIDTRAYFTSATIIIAVPTGIKIFR*LATI 388
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT+
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATL 31


>SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)
          Length = 371

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 121 WTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVI 255
           W++  LY   + +W N   Y      + N  L+ N+ C  SN VI
Sbjct: 326 WSNAVLYTYHSCLWSNAVLYTNHSCLRSNAVLYTNHSCLRSNAVI 370


>SB_57167| Best HMM Match : Ribosomal_MRP8 (HMM E-Value=3)
          Length = 698

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +1

Query: 151 TRIW-YNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIHCLSSSYIHC 291
           TR W +N  Y FT++      WLF     YT   ++    L ++   C
Sbjct: 424 TRRWLFNTLYTFTKRSLVTRRWLFNTLYTYTERGLVTRRWLFNTLYTC 471


>SB_48070| Best HMM Match : Metallophos (HMM E-Value=8.5)
          Length = 383

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +1

Query: 10  FSWSYYNIINR 42
           FSW+YY+IINR
Sbjct: 81  FSWNYYSIINR 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,923,659
Number of Sequences: 59808
Number of extensions: 136958
Number of successful extensions: 247
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)