Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G07
(363 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.16
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13) 28 2.0
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 27 3.4
SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1) 27 3.4
SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017) 27 4.6
SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9) 27 6.0
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4) 26 8.0
SB_39407| Best HMM Match : TIG (HMM E-Value=0) 26 8.0
>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 31.9 bits (69), Expect = 0.16
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 4 LSTFVSEXFTKMAKR---TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 153
+ST S + K+ R T+ GIT T Y +S +K+V + T+ A TC
Sbjct: 1 MSTHYSSPYKKLVPRQLTTRWSGITCMMSTHYSSSYKKLVPRQLTTRWASITC 53
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 4 LSTFVSEXFTKMAKR---TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 153
+ST S + K+ R T+ IT T Y +S +K+V + T+ + TC
Sbjct: 28 MSTHYSSSYKKLVPRQLTTRWASITCMMSTHYSSSYKKLVPRSLTTRWSGITC 80
>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
Length = 351
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 91 GASLRKMVKKMEVTQHAKYTCSFCGK 168
G +K ++ E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234
>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 30 YQNGQTYQKGWNYWQIWHTLRCL 98
YQ + GW WQIW LR +
Sbjct: 646 YQGRPLMKYGWLKWQIWRALRLI 668
>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 170 SLPQNEQVYFACWVTSIFLTIL 105
S P + V FA W SIFLTI+
Sbjct: 133 SAPTSLSVIFAAWFLSIFLTII 154
>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 300
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 153 LILW*GCYETFL-CRHLVL*AMQEDCSRRSLGILHYCCLIMQICCQEV 293
++L GCY L C H+V M C + +L C++M ICC +V
Sbjct: 127 VVLSLGCYVVMLLCHHVV---MSLSCY---IDMLLCRCVVMSICCYDV 168
>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.5 bits (58), Expect = 3.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 188 QERFIASLPQNEQVYFACWVTSIFLTILRRE 96
+++ AS + E ++ CWV S F+T + +
Sbjct: 167 RKKIAASCWEKESEFYECWVASFFITTAKTQ 197
>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
Length = 298
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 148 TCSFCGKDAMKRS 186
TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255
>SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)
Length = 893
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/56 (26%), Positives = 21/56 (37%)
Frame = -2
Query: 278 DLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLT 111
D H V EN + T RL D + + + + + VYF FLT
Sbjct: 670 DKHSAEHVAENVKPSCKTGSTRRLLDTLVAMQLLVKEMDSDPPVYFNSQTAEAFLT 725
>SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)
Length = 292
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 287 LTADLHDEAAVVENTQAP 234
+TADLHD A VV N + P
Sbjct: 247 ITADLHDTARVVVNLRTP 264
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 287 LTADLHDEAAVVENTQAP 234
+TADLHD A VV N + P
Sbjct: 972 ITADLHDTARVVVNLRTP 989
>SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4)
Length = 438
Score = 26.2 bits (55), Expect = 8.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 241 KLLLLQSSCIAYKTRCRHKNVS*HPYHKMSKYTLRVGL 128
+++ LQS YK C KNV HP Y LR+GL
Sbjct: 110 RVVTLQSDSYPYK--CYIKNVLSHPQESQESY-LRLGL 144
>SB_39407| Best HMM Match : TIG (HMM E-Value=0)
Length = 1710
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1
Query: 16 VSEXFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGK 168
+S +TK+ RT+K I GKY +++ V YT S K
Sbjct: 1245 MSSSYTKIICRTQKSHIPGKYNVSVSVGVQQCACTSHVGCSFAYTTSLTPK 1295
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,321,330
Number of Sequences: 59808
Number of extensions: 213000
Number of successful extensions: 574
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -