Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G01
(657 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40958| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_39471| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_8542| Best HMM Match : PT (HMM E-Value=4) 30 1.9
SB_7119| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058) 30 1.9
SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13) 29 2.5
SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_30956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_44102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5) 28 5.8
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_51944| Best HMM Match : LRR_1 (HMM E-Value=7.7e-34) 28 5.8
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069) 28 7.7
SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17) 28 7.7
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 28 7.7
>SB_40958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Frame = +2
Query: 470 QAMQPXNPGVCP--PANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNPYTGYGTQPQ 643
+A+ P P P P PAP+ GYG+P P P T T P
Sbjct: 175 EALSPYQPNAMPTPPQGVTPAPLPPYFQQQGYGYPQQPQPTQPVQPGQTQAPTAAQTTPA 234
Query: 644 QAQS 655
Q+
Sbjct: 235 PVQT 238
>SB_39471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 31.5 bits (68), Expect = 0.62
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Frame = +2
Query: 389 SPLNL-LNRSMLQQFHH-LGNLRCTPTIQQAMQPXNPGVCPPANQNPAPILTQNPNMGYG 562
+P+N N M+QQ ++ L P Q+A P P Q P Q PN G
Sbjct: 31 NPINQQANNPMIQQANNPLTEQANNPLTQEANNPTGQQPNQPTGQQPTDPTGQQPNDPTG 90
Query: 563 FPPLN-TPNMPYYMSNQNPYTGYGTQPQQ 646
P + T P + Q P QP Q
Sbjct: 91 QQPTDPTGQQPNQPTGQQPTDTTDQQPNQ 119
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Frame = +2
Query: 458 PTIQQAMQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPN-MPYYMSNQNPYTGYGT 634
PT QQ P P Q P Q PN G P +T + P + Q P
Sbjct: 72 PTGQQPTDPTGQQPNDPTGQQPTDPTGQQPNQPTGQQPTDTTDQQPNQPTGQQPTDTTDQ 131
Query: 635 QPQQAQS 655
Q + +S
Sbjct: 132 QDNEPES 138
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 31.1 bits (67), Expect = 0.83
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = +2
Query: 455 TPTIQQAMQ--PXNPGVCPPANQNPAPILTQN---PNMGYGFPPLNTPNMPYYMSNQNPY 619
+P +Q+ MQ PG PP + AP +Q P G PP++ P+ + + P
Sbjct: 568 SPQMQEPMQLPTSQPGGFPPQQRPGAPPTSQPGGFPPQRPGMPPMSQPSSMHMQPSGQPQ 627
Query: 620 TGYGTQPQQ 646
+ QP Q
Sbjct: 628 STAPQQPSQ 636
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/54 (40%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +2
Query: 482 PXNPGVCPPANQ-NPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNPYTGYGTQP 640
P NP PP N NP P PN Y PP N PN PY P Y P
Sbjct: 190 PPNPPYPPPPNAPNPPP-----PNPPYP-PPPNAPNPPYPPPPNAPNPPYPPPP 237
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = +2
Query: 458 PTIQQAMQPXNPGVCPPANQNPAPILTQN-PNMGYGFPPLNTPNMPYYM-SNQNPY--TG 625
P I P P + PP P P + Q P PP+ PN P + N NP+ +G
Sbjct: 385 PMIGPVTVPPPPLIPPPQASIPPPTMIQTLPPPSVPPPPIGVPNRPSVLYPNNNPFQRSG 444
Query: 626 Y 628
Y
Sbjct: 445 Y 445
>SB_8542| Best HMM Match : PT (HMM E-Value=4)
Length = 650
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 473 AMQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMS-NQNPYTGYGTQPQ 643
+++ +PG+ P N P L+ NP Y P P YY S NQ P PQ
Sbjct: 562 SLEIYSPGITPLGNPQPKYYLSGNPQPKY--YPSGNPQPKYYPSGNQQPRYYTSGNPQ 617
>SB_7119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 458 PTIQQAMQPXNPGVCPPANQNPAPILTQNPNMGYGFP 568
PT+ QA QP + + +Q+P P TQ G+G P
Sbjct: 258 PTVTQATQPAHIPLA--TDQSPTPYKTQGDQAGFGSP 292
>SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)
Length = 820
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 473 AMQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMS-NQNPYTGYGTQPQ 643
+++ +PG+ P N P L+ NP Y P P YY S NQ P PQ
Sbjct: 543 SLEIYSPGITPLGNPQPKYYLSGNPQPKY--YPSGNPQPKYYPSGNQQPRYYTSGNPQ 598
>SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13)
Length = 633
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 440 GNLRCTPTIQQAMQPXNP--GVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSN 607
G L P Q + P P G PPA AP P MGYG P+ P M Y ++
Sbjct: 250 GMLGHPPPKQGLLSPPPPAYGGGPPA-YGGAPNYGGAPPMGYGAQPMQAPQMQTYRNH 306
>SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Frame = +2
Query: 407 NRSMLQQFHHLGNLRCT-PTIQQAMQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTP 583
N+ + QQ ++ N + P QQA P P NQ LTQ N P
Sbjct: 6 NKPINQQANNPINQQANNPKTQQANNPMTQQANNPINQQANNSLTQQANN----PLTQQA 61
Query: 584 NMPYYMSNQNPYTGYGTQPQQ 646
N NP T G QP Q
Sbjct: 62 NKSLTQQANNPLTPKGKQPNQ 82
>SB_30956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 443 NLRCTPT--IQQAMQPXNPGVCPPANQNPAPILTQNPNM 553
N R TP+ +Q+ + NP P N NP P NPN+
Sbjct: 86 NPRSTPSQLMQRGIPKTNPNPNPNPNPNPNPNPNPNPNL 124
>SB_44102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -2
Query: 260 DIRLSKITSVSPHFECISDLTSA*LVSAGRLCIIRSI--VIEFQLHQLLVGKQMNIFII* 87
D S +S P FEC T L S LCI+ S+ +I + V K +I +
Sbjct: 4 DQTFSNNSSSPPTFECSWTQTGTELWSYVTLCILSSVLSLISNSVFLFTVYKTPSIQTVP 63
Query: 86 NFFTVSL 66
NFF SL
Sbjct: 64 NFFVCSL 70
>SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5)
Length = 293
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 583 WCVQRREAIAHIWILSKYGCRILVSGRTNSWVXGLHSLLY 464
WC+ R H I + R++ +G W L SLLY
Sbjct: 54 WCILARSCNGHTDIHTSLLYRLVYTGEVLQWTHRLTSLLY 93
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 455 TPTIQQAMQPXNPGV-CPPANQNPAPILTQNPNMGYGFPPLNTPN 586
TP+ Q+ Q P C P++ AP L NP P LN PN
Sbjct: 926 TPSSHQSPQSAPPSSPCTPSSST-APPLPTNPKSPSEAPSLNNPN 969
>SB_51944| Best HMM Match : LRR_1 (HMM E-Value=7.7e-34)
Length = 409
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 416 MLQQFHHLGNLRCT---PTIQQAMQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPN 586
MLQQ H+ + + T P Q + P P P + API T P MGY + T
Sbjct: 73 MLQQHHYQQHPQMTAMQPQYQPLLVPPPPQFLP-MSPAMAPIPTMQPVMGYSPTVVPTSG 131
Query: 587 MP 592
+P
Sbjct: 132 VP 133
>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
Length = 135
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Frame = +2
Query: 482 PXNPGVCPPA--NQNPAPILTQNPNMGYGFPPLN--TPNMPYYMSNQNP---YTGYGTQP 640
P PG PPA PAP P+ GYG+PP P P Y P G G P
Sbjct: 24 PAAPGGYPPAPGGYPPAPG-GYPPSGGYGYPPAGGYPPPQPGYAGGPPPPGIAPGIGGPP 82
Query: 641 QQAQ 652
Q
Sbjct: 83 PSGQ 86
>SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)
Length = 1590
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Frame = +2
Query: 410 RSMLQQFHHLGNLRCTPTIQQAMQPXNPGVC---PPANQNPAPILTQNPNMGYGFPPLNT 580
R M + L NL T+ A+ + PP PAP + P M +
Sbjct: 480 RDMYLSYDSLLNLDPCRTVSHALMTSQRPLTSDDPPHKIKPAPTTPRQPPMPLASSTKDV 539
Query: 581 PNMPYYMSNQNPYT 622
PN+P M++ T
Sbjct: 540 PNLPLNMTSHRETT 553
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +2
Query: 470 QAMQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPY 595
Q M P P + PP P P L P PPL P P+
Sbjct: 2611 QMMPPMVPMMLPPMLPLPPPGLPMQPEAPVQPPPLPPPGGPF 2652
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,600,647
Number of Sequences: 59808
Number of extensions: 442203
Number of successful extensions: 1377
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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