Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_F18
(528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 262 2e-70
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 56 2e-08
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88) 29 2.4
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 29 2.4
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8) 29 3.1
SB_11| Best HMM Match : E6 (HMM E-Value=2.2) 28 4.1
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 262 bits (641), Expect = 2e-70
Identities = 123/174 (70%), Positives = 140/174 (80%)
Frame = +3
Query: 6 KYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNA 185
K+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE TRK RIIDVVYNA
Sbjct: 10 KFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARIIDVVYNA 69
Query: 186 SNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKT 365
SNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK + TE E+ I+NKKRS
Sbjct: 70 SNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHC 129
Query: 366 ARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGKELEFYL 527
RK AR+ AKV + EQF TGRL ACV+SRPGQ GR DGYIL GKELEFY+
Sbjct: 130 TRKLEARKANAKVAPGMEEQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYI 183
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 55.6 bits (128), Expect = 2e-08
Identities = 24/77 (31%), Positives = 47/77 (61%)
Frame = +3
Query: 48 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 227
P++I ++ GG+TK +ALR++ G ++ S+ + I+ V+++ +N E + +VK
Sbjct: 37 PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96
Query: 228 AIVVVDATPFRQWYESH 278
+IV VD PF W++ +
Sbjct: 97 SIVQVDNKPFEDWFQEY 113
>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 147 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 260
T++ +I D++ N N VR +TL+ NA +++D F+
Sbjct: 18 TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53
>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
Length = 842
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 422 AIPHGAFAGLRGESPRSVWSRR 487
A PH A +G+R SPR +W R
Sbjct: 108 ACPHHAVSGVRVSSPRGIWCSR 129
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 422 AIPHGAFAGLRGESPRSVWSRRWL 493
A PH A +G+R PRS+W R L
Sbjct: 139 AYPHHAVSGVRVSPPRSIWCSRVL 162
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 422 AIPHGAFAGLRGESPRSVWSRRWL 493
A PH A +G+R PRS+W R L
Sbjct: 201 ACPHHAVSGVRVSPPRSIWCSRVL 224
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 422 AIPHGAFAGLRGESPRSVWSRR 487
A PH A +G+R PRS+W R
Sbjct: 232 ACPHHAVSGVRVSPPRSIWCSR 253
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +3
Query: 348 KRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGK 509
++S+K K + +L +EG H G LL S C R GY + G+
Sbjct: 133 EKSEKYTEKKIRSDKLTWIEGNEEGASHIGDLLLKYDSLVSSCSRRIGYDIQGR 186
>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
Length = 530
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -3
Query: 277 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 137
CD+ HC + T+T+ + +V + + ++ ++ V R +HS
Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494
>SB_11| Best HMM Match : E6 (HMM E-Value=2.2)
Length = 485
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Frame = +3
Query: 255 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLA---KVEGA---- 413
F W + L + +G + E +E + N +KT + YL K++GA
Sbjct: 174 FEAWKDIRKVLLNYKNEGTGIVEVDEGVTNN--IEKTLKLYLISPNHEIDQKLKGAPEKD 231
Query: 414 --LXEQFHTGRLLACVASRPGQCGRADGYILXG 506
E FH L CV + + DGY L G
Sbjct: 232 IYFYETFHFLGGLQCVPLQENEISITDGYALMG 264
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 146 NSQNPYH*CCV*CI*Q*-IGAYKDPCQECNCCSRCNSI 256
+S YH C C+ I Y DP EC CS+C+ +
Sbjct: 192 DSLEVYHECFGGCVGTLEIELYTDPYAECVTCSQCDGV 229
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,893,101
Number of Sequences: 59808
Number of extensions: 305746
Number of successful extensions: 842
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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